RNA id: AMCG00009660


Basic Information

Item Value
RNA id AMCG00009660
length 1874
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00009660
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43897866 ~ 43902765 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGGAACAAGTAGTTTTAATCCGGGTgcaaaactctctctctctacagaaAACAATGGTTGTACTTATATGTATCTGATTGTTAATTtacttcaaaattaaatgagCGAGGAGGGCCTTTCTGCAGTCGACATGGCCGCCAGTGCCGTGTCCTGGTCGGATAAAGCTCTCCGGCTTCTGCGGGGACTGAATAACTTCCACCGGCCCGgctccAGTCAGGCTAAGTGCTGCCCGTTCATGGTGTCGGGGCATCAGGTGGGCTGGGTGCCCCCGCGGGTGGTGACTGAGCTGGGCAGGTTCCCAGAGGTGTTCCAGTTGCAGAGGGGCACTGTGGAGCTCAGCCCCGGCCTCGAATCCTACACGCAGCGCTCTGCCGCAGTGGACACGGTGCTGCACTGCCTGCGGGAGGAGAACACGTTCCGGTGTCTCAGAGGCTGGAGGGACGAGAAATATGAAGTGATGCCCCAGTTCTGTGACCCCCCCATGCTGTGTATGGAGAGATCGGCCACCTGCTTGTTTGGGGTGAAGCGCTATGGAGTTCACATCAACGGCTTCACCCGGCAGCCCGATGGGGGTGTGAGCATGTGGGTGGCGCGCAGGGCCCTCGGCAAGCCAACGTATCCTGGACTGCTGGACAACATGGTGGCGGGGGGGCTGGCTGCTCAGACCAGCATCACCCAGACCCTGGTGAAGGAGTGTGCCGAGGAGGCCTGCATCCCAGAATGCATCGCGAAGTGTGCGCATCCCGTCAGCACTGTCAGCTACACCTACGAGGATGACGAGGGTGTTTTCCCAGAGTGCCAGTTTGTGTTTGACCTGGAGGTGCCACAGGGGTTTACACCCCAGATTGGAGATGGGGAGGTGCTGGAGTTCTACCTCTGGCCAATGGACAAGGTGAAAGAAGCACTGGTCACAGCAGAGTTCAAACCCAACTGCGCTCTGGTCGTGTTGGACTTCTTGATACGACACTCCTACCTGGATCCTGACACTGAGCCACACTACCAGCAGTTTGTGGCTGGACTGCACCGGTCGCTGTAACCCTTACAGAAGCCCCCACTCGGCACGCCTGGCCTCTGCCACCAGCCCCACCTCAGACACGGCTGCTTCTCGGTGCTCCAGGAAAAATGGAGCTTCCACACACCTCCCTTTCAATTCTAAAAGGGACACTCCTGGTGCTCCACACACCTGCGCCCCTGTGCTTCACGGTGTGGGTCTGTGTTTTAGGAAGCGCAGATGAATACTTTCTCCACACTGAGGACAAGGACCGGCTTCTGTACAATGGGTTCTGAACTGCACAACACCCATCTGGGGCTCAGCCTCCTTTGGCCAGACAGTACCAAGAGGATACGATTCCCCTTGCCCCCTCACTGCGATAACGggtacataaaaaaataaaaataaaaagctgtgagATTGTTTATTTGATACTCCAGGCAAATACATTTCCTTACAAATGTTATTAGCCAGGctcacaaaccacacacacagttgGGCACAGTTATTGCGATGCCACCACGTTGTTCCTCGGCACAAAGAGGCCACACTCGTGACTTCAGAGAGGACCCTCCTCCTCGACTTCTGATCAACCACAGAGTTTGTACAACACATGAGCACGGAGAGCGCTGTGCTTGAAGACTGAAGAGCAACCATAGCGGGCGAGATCACAGAGCACTCCAGCACCTTTACTGTGGGTCGTGGGCGGGACCTCATCCTCCACAAAACAGGCCTGACCGGCCCGTGTAGCTCCAGCCCGAGTCGAGCAGCAGGGCAGATTCATCCTCTCCGGAGTGTCAGTGTCCCCGGTGGCACCTTGCACAGGGGTGTCCGTGTGGCCGAGACCACAGGTGCCAAAtgtctgtgtgggggggtggggg

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72891 lncRNA upstream 22143 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 216913 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 453549 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 573287 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 586804 43309860 ~ 43311062 (+) True G58215
TU72908 lncRNA downstream 6823 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 18709 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 266720 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 422386 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 425506 44328271 ~ 44360062 (+) True G58513
AMCG00009662 mRNA upstream 7395 43880029 ~ 43890471 (+) True AMCG00009662
AMCG00009659 mRNA upstream 24162 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009658 mRNA upstream 45337 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009655 mRNA upstream 141507 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009653 mRNA upstream 149738 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009661 mRNA downstream 37528 43940293 ~ 43951629 (+) True AMCG00009661
AMCG00009670 mRNA downstream 75827 43978592 ~ 43992050 (+) True AMCG00009670
AMCG00009668 mRNA downstream 104149 44006914 ~ 44013300 (+) True AMCG00009668
AMCG00009667 mRNA downstream 110961 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009669 mRNA downstream 122779 44025544 ~ 44051535 (+) True AMCG00009669
TU72303 other upstream 1819625 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2903207 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3792918 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3948666 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4460871 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 30187 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 483732 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 664600 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 681797 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 729985 44632750 ~ 44651967 (+) True G58600

Expression Profile