RNA id: AMCG00009773


Basic Information

Item Value
RNA id AMCG00009773
length 3043
RNA type mRNA
GC content 0.66
exon number 14
gene id AMCG00009773
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45763177 ~ 45771249 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGTCCAGGGTTTCCAGGACTACCTTGAGAAGCGGTGCCCCGGAGCGGCCGTGCCGGTGGACCTGCTGAAGCTCGCCCGCACCGTGGCTCGCCAGCAGCCGCTGCACCACCCGCACCcgcatcaccaccaccacccgcACCACCACCACCCGCACCCGCCGCCGCCTCCTCCGCCGCCGCCCCCGCCGGCCCGGCTGCTCATCGACGCCGACTCCGGCCTGCAGCGGCTGTATGGGGGCTACCAGACGGACTGGGTGTGCGGCGGCCAGTGGAACGCCATGCTGGGGTACCTGGCGGCCCTGTCGCAGGCCTGTCTGTACCAGGGCGGCCTGGAGCTGGTGGTCGTGTTCAACGGCACGCTGGGCAAGGAGCGCTGGCCCGAGTGGGCGAGGCGGGCGCAGGGCCAGAGACAGACCGCCCAGCTCATCGTGGTGCAGACGCTGGAAGACCACCACCAGGAGGTGATCGGCGTGTATCGGGACTGCGGCTCCCAGGGCCTGATCGCCCACGACCCTGAGTACGCGCTGTGCAACCTGCCGGCCTACTACAGCGCCCATGCCCTCAAGCTCAGCTGGAATGGCAAGAACCTCACCACCAGCCAGTACCTGCTGCCCGAGGCGGCGCGCCAGCTGGGCCTGCGCCCTGCACACCTGCCCGTGTTCGCTGCCCTACTGGggaACCATATCCTGCCTGATGAGGACCTGGCTGCTTTTCACTGGAGTCTGCTGGGCCCTGAGCATCCCCTGGCCTCCCTCAAGGTGCGCGCTCACCAGCTGGTCCTGCCCCCCTGTGAGGTGGTGATCAAGGCCGTGTCTGAGTACGTCTCCGCCATCACAGACCTGAGGTTTGGGCCGGCACAGTATGGAGGTCCTCCAGGGCCGCACAGCCACATGGGGGCACTGCAGCCCAGCAAACCACTGtttCCCCCCCCGCAGGCCGCAGGGAAGCCACCCTATCATGGCGGCTCGTTCCCGGCAGGCCCTGCCCTGTTGTTCCAGGCCACGCCCCCAATGCCAGAGTGCAACGACACGCTAGCCAAGACGGCCTTCTCCGAGTGGTCGGCTCCCTACGACAACTCTGGCAGCGCCACCCAGGGGCCCAAATACCCCAACCACAACGCAGCATCCCACCCCAAGGGAGGCTGGGAGGAGGCAGCCGGGAAAGGGGGTGGGGCCAAACCCGGGCCTGGGGACGGTCTCCAGGGCAACGGGGGCTCTCAGATCCCCTCGCTGCTCTCCATGGCGACCCGCAGTCACATGGACATCACCACCCCCCCGCTGCCGCAGGTCGTCGCCGAGGTGCTGAGGGTGGCTGAGCATCGCCACCGCCGGGGGCTCATGTACCCCTACATCTACCACATCCTCACCAAGGGTGAGATCAAGATCCCGGTGTGCGTGGAGGACGAGGGCAGCCCCGACCTGCCGCCCGCCGCCCTGCTGTTCCGCTCGGCCCGGCAGTACGCCTACGGGGTTCTGTTCAGCCTGGCGGAGACGCAGCGCCGCCTGGAGAGACTGGCCCTGCGCAAGAGGATTCCCCTGGAGGTGCCCCCGGTCATCGTGAAGGAGTGGTCGGCCTCCAAGGTGAAGTCGGCCCTGACCCCTGAGCTGGTGCCAGCGCTGGCCTTCCGGGAGTGGACCTGCCCCAACCTGCGGCGCCTGTGGCTGGGCCGGGCCGTGGAGGACAAGAACCGGCGCGTGCGGGCCTTCCTGGCCTGCCTGCGCTCCGACACCCCCGCCATGCTGAACCCCGGCCTCGTGGATAAGGTGGACTCGCGGGGCGTCCAGCTGGCGGCGCTGTTCATGTGCGGCGTGGACACGGCACTGCTGGTGAATGACGCCTGTGGGCAGCCCGTGCCCTGGGACCACTGCTGCCCCTGGGGCTACTTCGACGGCAAGCTGTTCCAGAGCAAGCTGGCCCGGGGCGGCCGAGAGCGGGACAGAGCCACGCTGCTGGACATGTGCGAGGGCCAGGAGGAGCAGATGTCTCGCGTGGAGAAGATGAGGCAGGCGATACTGGAGGGCATCAGTCTGAGCCGCcagcctcctccccctcctccactgcccccccctcccttcaTGTCCCCCATGGTGCCACCCTTCTACCCCGTGCCCCTGTACCCCCGGCCACTGGGTACCCTGCCCCACCACAGCCAGCACCGCACGCGTGCCTTCCCAGgaATCCAGGCCATCCCCCCCCAGGGAGGGAAGCTGGAGATCGCTGGCATGGTGGTGGGCCAGTGGGCCGGGAGCAAACCACTCCGCGGCCGGGGGGGGTTTAACATGCAGGTGGTGTCGGTGGGCGGCGGCCGAGGAAGAGGGAAGGAATTGTCTATgaagggaaggggagggaaGAAACCAACAACACAAAGAACACAGGTGGGCTCCACAAGCCCCTCCTCCAACGGAACCCCCAAGCAGCCTGAAGATTCCAAGGAgccgggggtgggggttggggtgggggcCCCGGAGCAGCAGCTCAATGGCAGCTCTCCGGCCCCCTCTATTGACCAGCCCccggaacaacaacaacagcagcctCCGCCGCCACTGCCCCCCGCTGAACCAATCCAATGTGCCTTACCCAGCAGAGACAGCCAATCAGGGGCCACAGAGGCCGACGCCCCCAGTTGCCGTGACGACTGCCAGGACGAAGCCTCCGCCGCGCTGCAGAAAGAGGAGTGAAGACGGAGGGGAGGGTGTCAGACCGAGACGAGGGGGCGGGGAGATGGGTGTGGTATTGAGGGGGAGGAGACTGTTAGTCTCTCCCTTTACCCCtccttttttctccttctctttcaattcaattgaaaaaagctttattggcatctCTAATTGACACCAGTGTTGCCACAGCGGACACTCTCTGTTTTACTCTCCTCCCCCCACCTTGCGCTGAAGTGAGCAGACCGAATCTCCATAGGGACACGCAGacagacccccccccacacacacacacacacacacacacacactcactccctctctctcacgcCTACAGATTCCTCTCTGGGATGGGGTacgagggggagagagagataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73869 lncRNA downstream 37 45759711 ~ 45763140 (-) True G59099
TU73855 lncRNA downstream 12204 45750106 ~ 45750973 (-) False AMCG00009769
TU73857 lncRNA downstream 14719 45747557 ~ 45748458 (-) True G59090
TU73841 lncRNA downstream 16923 45745941 ~ 45746254 (-) True G59077
TU73798 lncRNA downstream 83057 45675703 ~ 45680120 (-) True G59042
TU74008 lncRNA upstream 136005 45907254 ~ 45908142 (-) True G59191
TU74023 lncRNA upstream 137332 45908581 ~ 45915868 (-) True G59202
TU74025 lncRNA upstream 137332 45908581 ~ 45964055 (-) False G59202
TU74073 lncRNA upstream 290244 46061493 ~ 46112681 (-) True G59236
TU74082 lncRNA upstream 351026 46122275 ~ 46175968 (-) True G59244
AMCG00009769 mRNA downstream 5226 45748676 ~ 45757951 (-) True AMCG00009769
AMCG00009768 mRNA downstream 24347 45705867 ~ 45738830 (-) True AMCG00009768
AMCG00009770 mRNA downstream 58667 45701933 ~ 45704510 (-) True AMCG00009770
AMCG00009771 mRNA downstream 67915 45683560 ~ 45695262 (-) True AMCG00009771
AMCG00009767 mRNA downstream 84322 45678241 ~ 45678855 (-) True AMCG00009767
AMCG00009776 mRNA upstream 3620 45774869 ~ 45781213 (-) True AMCG00009776
AMCG00009777 mRNA upstream 10994 45782243 ~ 45799948 (-) True AMCG00009777
AMCG00009775 mRNA upstream 30153 45801402 ~ 45811884 (-) True AMCG00009775
AMCG00009774 mRNA upstream 94651 45865900 ~ 45869735 (-) True AMCG00009774
AMCG00009779 mRNA upstream 125845 45897094 ~ 45905338 (-) True AMCG00009779
TU73631 other downstream 439227 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other downstream 439855 45320843 ~ 45323322 (-) False AMCG00009748
TU73318 other downstream 978043 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 1196343 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 1220368 44541894 ~ 44542809 (-) True G58584

Expression Profile