RNA id: TU69429


Basic Information

Item Value
RNA id TU69429
length 2596
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G55551
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29759527 ~ 29762165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTAGAAGGGTCTGTAGAAACAGATAGCACTTTAATGAGTGAGGTGAGCACTCGAGGAAAACATGACTGACAGGGCCTGCTCCAGGGGGCTCTGGAAAGATCTGAGCGCCCAGTGCATACAGCAATGGTAAGAAATGGACTTTACATTTCAATCGCCCTCGCTTTTttaaggaaattacatttttattactatgcatttagattttcttaaatacaatcacatttaataaatacaccacCTTTGATGGGAAACATCATGCAAGGCCTGAACTCAGATAAAACAAAGGATTTTCtgcaacaagaaaacaaaaaacaaaataaacaaaaaaacatttttatgttgaaCAAAGCACTCAGAATACTTTATGGAGAATCATATTCTACGATTAAAGACCAaggtatatttgtattacagacAATATGTACTTTTCTTTGAGCTGAACAACAATGATAAAATTCAGAATATGCCAACCGCTGCATGGTTTTACCCTTTTGGACCAACTGAGTAAAACCTTCAGCAAAGACCTATAAGAAATAACCTGGCACTCATGAGATACAGAGAAAACCCACTCTCTAGTCTCAGTTTCGAGTACCTCAGATAAACAAATCTATAACGTTCTCACAGAAGAAGCTTGGAAGTGCATTGTGCATCCGAGTGTGTGATGGGCAGGCAGTCGTAAAAGTACAGAGTTCCTGAAGTGGAAAGTGAGCAAAGCGAGTATTTCTTTGCATTGGGATGCCTTGAGAGCAGTGTCGTTGCCAAGCAAAGACAGGAACATGAAGCAAATGGTTCACATTCTTCCAAAATGTTCACCTTATAAACTGCATTCTCGAGAGAGTTGTCCTActctaaaaaattaaatgcttccTGTCCCTCCTGTGTTTATGGACTGCCGGTGTGCAGAGGCCTATAAAACCAGGCGTCGAATGGAAACCAAAGCTGTATCCAAGCTGGCTGTGACAGGAAGGatatagtgtttttttctgattattgttttttttgtatttaatatgcgTAGGGTTGAATGTCAGGGGGAAACAAACACAAGCGACAATCGTGACAGAGAAACCGAACACCCCACTGCTTATCACGGCCATACTCATTTCACTGAGCAAACAAAAGGTGTGGACGTCTGAGGTCCACAGCAATTCAGTCCCCCTGGACAAATCATAGGTGTTACACACGCAGACCGGCACTCGCACATCAATCCCGCTGAAAGAGCAAAGAGTATTCCTTCCatcatgtgtatttttgtttagtttttcctcaTTATTCACCTTTTCAAGACCCAGTGCTGACTCAAATGACATACTATACCTCATAAGTGCTCTAAAGACTGTTACAAAGCAGTCCCTTTcatttgtgtgaagaagtgagCTTTAAACCAGCGAGCCATTCAAGATTCGTCTCGAGAGACTGTCTCTGAACTCTTTTAATACACAACAAAAGGGGTATTTACATGCATCTATATATTGGGGAAATCTGGCCGGGCGAACAAGAAAACAGTTCTGTAAAGCCCATCACCCTCTTTTCATCTGATGGAGCACAGCATAAAGTCAGATTGACAGCATCTGACTGCAGGCCATGATTCTGTCGATCGTTCCTGAACATCTAGGATACTACTAAACAGAAGGTGGTATAAATCTGAACGTCTGTCTGTTAACACTCACTTCCTGCATCCCAAGATCCACATTGCATTAGTTCGATGACCAGTGCGCTGAATCAGCAACAGATGTGGAATGGTGTAAGGGCTTAATAAATAGCAGGCCTGCCataagggaaaaaaagtttttcccTCCGTACAAAATTCCTATTTATTAGAAACAGGGGAAAACTGGCCATAACCaaggaagtatttttttttccttcttttttatatatgcagGACATGCCTGCTGTCTGGTGGATGTTGTTAACTGTTTTTTATAAACCAGACAAAATCAGACATCTGGACTGAATTGGTGTGCCGTATCGATCTGTGCTTTTCTACAGAGGAAATGTAAATTGGAGCATAAAAGGAAGCACCTTACACTCATCTCTGGGTGCTCAATAGGCTTCATTTCACTTTAGATTTTACCAAGAATTTTAAAATGGGGTAAATTGCTTGTTCTTAAATTGTGCCAAGCTAATTAGGccataaaaattaaaatctatgaGAAAAAGGAATAGATGGGCAGTAATTTACAAGACAGGGTGAggacatgtttgttttctttgatcaGTGCATATTCTGTGTGATCCACAGTCTGTACCCAAGGTCTCtgtaaaagaaagagagaaaaatatgaattaagactttttttttttttgcctgacAAGTTCACCTTCAACAGCCTGTCCctattttctttaacatttcatAACTTATGAGGCACACAGACATCAatgttacattatatttcaaacaGATTTTTAACCTCAAGCAACTTTGACAGCATGTTGAAccaaaatgaatggaaaatgtaGGGAGGTACAGTATAATGTGTTCAGTAGCTTCAAGGTATGGGCAACAGGCTTGGCCAAATACAATAACTAGGTATAGAAACCTAGTCAAGTATAACAAAGCAGTCAGGGGTCAGATGTACTATAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69343 lncRNA downstream 300700 29458615 ~ 29458827 (-) True G55488
TU69242 lncRNA downstream 702286 29055713 ~ 29057241 (-) True G55404
TU69188 lncRNA downstream 865644 28843473 ~ 28893883 (-) True G55359
TU69150 lncRNA downstream 1003894 28755298 ~ 28755633 (-) True G55333
TU69139 lncRNA downstream 1031557 28721540 ~ 28727970 (-) True G55326
TU69510 lncRNA upstream 213464 29975629 ~ 29976269 (-) True G55610
TU69515 lncRNA upstream 227734 29989899 ~ 29990810 (-) False AMCG00009235
TU69564 lncRNA upstream 473994 30236159 ~ 30236395 (-) True G55648
TU69634 lncRNA upstream 718614 30480779 ~ 30483373 (-) True G55703
TU69654 lncRNA upstream 729073 30491238 ~ 30491980 (-) True G55722
AMCG00009232 mRNA downstream 53724 29705333 ~ 29705803 (-) True AMCG00009232
AMCG00009229 mRNA downstream 54598 29662629 ~ 29704929 (-) False AMCG00009229
AMCG00009228 mRNA downstream 117615 29636991 ~ 29641912 (-) True AMCG00009228
AMCG00009230 mRNA downstream 171673 29573069 ~ 29587854 (-) True AMCG00009230
AMCG00009217 mRNA downstream 562384 29187536 ~ 29197143 (-) True AMCG00009217
AMCG00009234 mRNA upstream 146444 29908609 ~ 29927458 (-) True AMCG00009234
AMCG00009233 mRNA upstream 167941 29930106 ~ 29955770 (-) True AMCG00009233
AMCG00009235 mRNA upstream 215772 29977937 ~ 29990676 (-) True AMCG00009235
AMCG00009236 mRNA upstream 229411 29991576 ~ 29998483 (-) True AMCG00009236
AMCG00009242 mRNA upstream 367623 30129788 ~ 30138314 (-) True AMCG00009242
TU69394 other downstream 89190 29660960 ~ 29670337 (-) True AMCG00009229
TU69243 other downstream 696497 29058284 ~ 29063030 (-) False AMCG00009215
TU68783 other downstream 2141438 27613598 ~ 27618089 (-) True AMCG00009165
TU68523 other downstream 2962873 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 4583149 25173677 ~ 25176378 (-) True AMCG00009100
TU69579 other upstream 487706 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 840414 30602579 ~ 30657612 (-) False AMCG00009265
TU69850 other upstream 1172399 30934564 ~ 30937251 (-) True G55878
TU69860 other upstream 1182202 30944367 ~ 30947211 (-) True G55881
TU69861 other upstream 1210788 30972953 ~ 30985995 (-) True AMCG00009269

Expression Profile