RNA id: TU69515


Basic Information

Item Value
RNA id TU69515
length 912
lncRNA type sense_over
GC content 0.38
exon number 1
gene id AMCG00009235
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29977937 ~ 29990810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGACCTACTATCTGCTGGAGCTGTAggcttgtattttctttgttcgTGCTGAAGCTCAGAAGTGTACAGACACTGAAAACAGAGCAAAGCAAAACTGAATACAGGGTCCTatctctttattttatatttcaggaAGTGGTTAAATTGAAAGCTAGACATGAAAGGTAAGACTCCAATGAAGAATAGTGAGACAAGCTATTGTAAATACACTATATAAcacttcaaaaaagaaaatgtaaggtATTGACCAGCACTGCAATTTTATTAGCAATGCATCGCTAAATgcaacaaagaaattaaatgatcctaaaattggaagctgtaggcattcagggtaatgtaagtagatgaattatgaactggctgatgtataggaaacagagggtgtcgattatatgagttgcttctaactggagtgaggttgttagtggagttccacagggatcagtattagggcctttgctttttctaatctatattaatgatctggactctgggagagttagcaaacttgtcaaattggcagatgatactaaagtaggtggctcagcagatacaatctcagcagcacaggctattcaaagggacttagataatattgagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtaatacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactggaagaagtaacgcatgagaaagtccacgtagactcctagatctttctccaaccaaacaatgtggggaagcaataaaaaaggcaaacataatgttatggtatattgtcaaaagtgtagaatttaaaacaaggtcaGTAATGTTCAGaaaatgcactagttagagctcatctggatactgtgtacagttctgggctccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69510 lncRNA downstream 13630 29975629 ~ 29976269 (-) True G55610
TU69429 lncRNA downstream 227734 29759527 ~ 29762165 (-) True G55551
TU69343 lncRNA downstream 531072 29458615 ~ 29458827 (-) True G55488
TU69242 lncRNA downstream 932658 29055713 ~ 29057241 (-) True G55404
TU69188 lncRNA downstream 1096016 28843473 ~ 28893883 (-) True G55359
TU69564 lncRNA upstream 245349 30236159 ~ 30236395 (-) True G55648
TU69634 lncRNA upstream 489969 30480779 ~ 30483373 (-) True G55703
TU69654 lncRNA upstream 500428 30491238 ~ 30491980 (-) True G55722
TU69697 lncRNA upstream 662102 30652912 ~ 30655021 (-) True G55760
TU69824 lncRNA upstream 818766 30809576 ~ 30816091 (-) True G55861
AMCG00009233 mRNA downstream 34129 29930106 ~ 29955770 (-) True AMCG00009233
AMCG00009234 mRNA downstream 62441 29908609 ~ 29927458 (-) True AMCG00009234
AMCG00009232 mRNA downstream 284096 29705333 ~ 29705803 (-) True AMCG00009232
AMCG00009229 mRNA downstream 284970 29662629 ~ 29704929 (-) False AMCG00009229
AMCG00009228 mRNA downstream 347987 29636991 ~ 29641912 (-) True AMCG00009228
AMCG00009236 mRNA upstream 766 29991576 ~ 29998483 (-) True AMCG00009236
AMCG00009242 mRNA upstream 138978 30129788 ~ 30138314 (-) True AMCG00009242
AMCG00009243 mRNA upstream 171610 30162420 ~ 30171530 (-) True AMCG00009243
AMCG00009244 mRNA upstream 190271 30181081 ~ 30185651 (-) True AMCG00009244
AMCG00009240 mRNA upstream 246098 30236908 ~ 30244496 (-) True AMCG00009240
TU69394 other downstream 319562 29660960 ~ 29670337 (-) True AMCG00009229
TU69243 other downstream 926869 29058284 ~ 29063030 (-) False AMCG00009215
TU68783 other downstream 2371810 27613598 ~ 27618089 (-) True AMCG00009165
TU68523 other downstream 3193245 26793541 ~ 26796654 (-) True G54821
TU68195 other downstream 4813521 25173677 ~ 25176378 (-) True AMCG00009100
TU69579 other upstream 259061 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 611769 30602579 ~ 30657612 (-) False AMCG00009265
TU69850 other upstream 943754 30934564 ~ 30937251 (-) True G55878
TU69860 other upstream 953557 30944367 ~ 30947211 (-) True G55881
TU69861 other upstream 982143 30972953 ~ 30985995 (-) True AMCG00009269

Expression Profile