RNA id: TU72734



Basic Information


Item Value
RNA id TU72734
length 319
lncRNA type intronic
GC content 0.46
exon number 1
gene id G58178
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43212710 ~ 43213028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gggaagcaataaaaaaggcaaacaggatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72699 lncRNA upstream 202660 43006624 ~ 43010050 (+) True G58148
TU72700 lncRNA upstream 202708 43006601 ~ 43010002 (+) False G58148
TU72671 lncRNA upstream 273836 42938007 ~ 42938874 (+) True G58123
TU72524 lncRNA upstream 576257 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 734598 42477715 ~ 42478112 (+) True G57987
TU72753 lncRNA downstream 36375 43249403 ~ 43249641 (+) True G58195
TU72776 lncRNA downstream 96832 43309860 ~ 43311062 (+) True G58215
TU72773 lncRNA downstream 105888 43318916 ~ 43324579 (+) True G58214
TU72836 lncRNA downstream 226371 43439399 ~ 43444317 (+) False AMCG00009647
TU72871 lncRNA downstream 465323 43678351 ~ 43680953 (+) True G58291
AMCG00009633 mRNA upstream 99760 43105479 ~ 43112950 (+) True AMCG00009633
AMCG00009632 mRNA upstream 160319 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009631 mRNA upstream 209388 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009626 mRNA upstream 240332 42960967 ~ 42972378 (+) True AMCG00009626
AMCG00009628 mRNA upstream 285653 42914780 ~ 42927057 (+) True AMCG00009628
AMCG00009639 mRNA downstream 39174 43252202 ~ 43253062 (+) True AMCG00009639
AMCG00009634 mRNA downstream 45492 43258520 ~ 43266899 (+) True AMCG00009634
AMCG00009635 mRNA downstream 54899 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009640 mRNA downstream 102600 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009646 mRNA downstream 203803 43416831 ~ 43424850 (+) True AMCG00009646
TU72303 other upstream 1134469 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2218051 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3107762 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3263510 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3775715 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 719924 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1173469 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1354337 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1371534 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1419722 44632750 ~ 44651967 (+) True G58600

Expression Profile