RNA id: AMCG00010835


Basic Information

Item Value
RNA id AMCG00010835
length 876
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00010835
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2180504 ~ 2182472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCCTAGCCGACGCGCTGGCCACCAGCACCCTGCCCTTCCAGAGCGCCAAGTACCTGATGGACACCTGGCCCTTCGGTGAGCTCATCTGCAAGATCGTCATCGCCATCGACTACTACAACATGTTCACCAGCATCTTCACCCTGACCATGATGAGCGTGGACCGCTACATTGCCGTGTGCCACCCAGTGCGGGCCCTGGACTTCCGCACACCCGTCAAGGCCAAGATCATCAACGTGTGCATCTGGATCCTCTCCTCCGCCATCGGGGTGCCCATCATGGTCATGGCCGTCACCAAGGTCACTGAAAAAGGAAACATCGTGTGCACGTTGAGATTCCCCGACCCGGACTGGTACTGGGACACCGTGACGAAGATCTGCGTCTTCATCTTCGCCTTCGTGGTACCTGTGCTGGTCATCACCATCTGCTACGGCCTGATGATCCTGCGTCTGAAGAGTGTGCGCCTGCTCTCGGGCTCCAAGGAGAAGGACAAGAACCTGCGGCGCATCACGCGCatggtgctggtggtggtggcggcCTTCATCGTCTGCTGGACGCCCATCCACATCTTCATCATTGTCAAGACGCTGGTGCACATCGACAAGAAGAACCCCTTTGTCATCGCTAGCTGGCACCTGTGCATTGCGCTGGGCTACACCAACAGCAGCCTCAACCCGGTGCTGTATGCCTTCCTGGATGAGAACTTCAAGAGGTGCTTCCGGGACTTCTGCCTGCCCTTCCGCTCCCGGATGGACCAAAGCAGCTTCAACAGGGCCAGGAACGCCACCCGGGAGCCGATGTCCGTCTGCACGCCCTCGGAAGCAGGGAAGAGGCCGGTATGA

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038046 enkephalin receptor activity molecular_function

KEGG:

id description
K04213 OPRD1; delta-type opioid receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128138 lncRNA downstream 2988 2177276 ~ 2177516 (-) True G102615
TU128132 lncRNA downstream 8703 2171530 ~ 2171801 (-) True G102609
TU128080 lncRNA downstream 216551 1962282 ~ 1963953 (-) True G102572
TU128070 lncRNA downstream 267551 1857460 ~ 1912953 (-) True G102562
TU128049 lncRNA downstream 372416 1807629 ~ 1808088 (-) True G102543
TU128146 lncRNA upstream 69647 2252119 ~ 2252467 (-) True G102623
TU128152 lncRNA upstream 134293 2316765 ~ 2317264 (-) True G102629
TU128166 lncRNA upstream 180408 2362880 ~ 2363110 (-) True G102639
TU128189 lncRNA upstream 204251 2386723 ~ 2437698 (-) True G102651
TU128213 lncRNA upstream 299425 2481897 ~ 2488417 (-) True AMCG00010843
AMCG00010836 mRNA downstream 7 2143118 ~ 2180497 (-) True AMCG00010836
AMCG00010827 mRNA downstream 343619 1821651 ~ 1836885 (-) True AMCG00010827
AMCG00010829 mRNA downstream 379744 1798219 ~ 1800760 (-) True AMCG00010829
AMCG00010828 mRNA downstream 383912 1792777 ~ 1796592 (-) True AMCG00010828
AMCG00010817 mRNA downstream 937854 1222087 ~ 1242650 (-) True AMCG00010817
AMCG00010840 mRNA upstream 149744 2332216 ~ 2336743 (-) True AMCG00010840
AMCG00010839 mRNA upstream 183001 2365473 ~ 2382245 (-) True AMCG00010839
AMCG00010841 mRNA upstream 259755 2442227 ~ 2449554 (-) True AMCG00010841
AMCG00010843 mRNA upstream 299402 2481874 ~ 2496446 (-) False AMCG00010843
AMCG00010842 mRNA upstream 317333 2499805 ~ 2502500 (-) True AMCG00010842
TU127939 other downstream 1145630 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1202377 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2030675 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 557344 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 576006 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 997498 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 1138341 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 1143386 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031066 True 1486 mRNA 0.50 4 NC_007113.7 30878864 ~ 30886567 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_11155692_11159471.mRNA True 3211 mRNA 0.43 3 CI01000004 11154644 ~ 11160500 (+)
rainbow trout (Oncorhynchus mykiss) LOC110519907 True 1284 mRNA 0.50 2 NC_048567.1 36436381 ~ 36437754 (-)