RNA id: AMCG00011896


Basic Information

Item Value
RNA id AMCG00011896
length 1263
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00011896
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6406462 ~ 6408530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAACAAAAGGAGCGATGCACAAAAGGAAACGCAATGCCCCACAAGCCGAGGGACCCAGACAGAGCCCACGAGGAATAAAGACTGAGCGACACATTGCAGAGGGTTGGGGGCTGTCACAGCCCAAGAGGGCCTGCAGCAGAGACATCCTTACCAACCTCTCCACAGGCCTTCTGCGGCTGGTGCTGCTGGGGAAGACTGGGTCAGGGAAGAGCGCCACAGGGAACACCATCCTGGGCAAGAACGTTTTTATATCAGAATGCAGTCCCAGCTCTGTCACACAGCAATGCAACAAGCGTACAAAAAATGTCTGTGGAAGAAAGGTCACTGTAGTGGACACCCCAGGCCTGTTTGACATGGCCCTGCCTGTGGACAGTGCAGCCAAGGAGACCGTGAGATGCATCCAGATGTCCTCCCCGGGGCCCCACGCCCTCCTGCTGGTGCTGCAGCTGGGCCGCTAcacagaagaagagaaaagggcAGTCGGTATCATCCAGCAGATATTCGGAGAGGAGGCCACCAGGTACATGATAGTGCTGTTCACACATGGAGAcaaactcaaacaaacaaacattgagGAATTTATCAGCAAAGACCAGGACCTGCAGCAGCTAGTGACGAGCTGCGGGGACAGGTATCATGTCCTGAATAACAATGAAGAGGAAAGTCGAGGCCAGGTGACTGATCTCATTTGGAAGATCGGCAAGATGGTGCAGAACAACGGGGGCAGCTGCTACACTAGTGAGATGTACCAGAAGGCCGAGGAGAATCTCAGACAGATAGAGGAGAAGTTCTTGGACGATCTGCAGACAAAGCTTTGGGAAGTGGAGGAGAGACACCAGAGGGAAAAGAGAGAGTTAGAGCTGAAGATTGCAGACCTAGAAGAAAACGAGACAAAAAAGACAGAACTGGAGCAAAAAATGTGCGAAGAGAAGCAGGAGGTTCAGAATCATttccagaagaagaagaagaaagcaagagaggaggcagagagcaGCACTATACTGCAGGACCTTTTCACTGGGGTGAAGAGTGTTTTCTATAAATTGTGGGGAAAATAGTTACATCCTGTAGTGCCCTTACATTGAAGTATGACATGGATGTGTTGAGTGCAGTAAATGATATTGCTCATATAAGCTCAGAGGGGAACAGGACAGGTGGTGATGTGTATAAAAGCATGTGTTCAGTGGTCAGTGTTGcttatgtttgtatataaagCTGTGAGGTGTATTACATTGTGTATCAAATAAAACTCTTgattttt

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 58756 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 146094 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 181943 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 305443 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 329077 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 158329 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 180886 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 240180 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 267986 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 305828 6714358 ~ 6717923 (+) True G133440
AMCG00011905 mRNA upstream 1984 6402981 ~ 6404478 (+) True AMCG00011905
AMCG00011889 mRNA upstream 33282 6371242 ~ 6373180 (+) True AMCG00011889
AMCG00011893 mRNA upstream 38151 6364173 ~ 6368311 (+) True AMCG00011893
AMCG00011892 mRNA upstream 45582 6351594 ~ 6360880 (+) True AMCG00011892
AMCG00011891 mRNA upstream 59056 6332451 ~ 6347406 (+) True AMCG00011891
AMCG00011899 mRNA downstream 12603 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011898 mRNA downstream 40675 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011897 mRNA downstream 64621 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011906 mRNA downstream 94279 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011908 mRNA downstream 118329 6526859 ~ 6531036 (+) True AMCG00011908
TU167105 other upstream 149780 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 518570 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 518570 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 576930 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 645214 5759858 ~ 5761248 (+) True AMCG00011830
TU167207 other downstream 75417 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 136858 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 828411 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1096552 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1156278 7564808 ~ 7566028 (+) False AMCG00011971

Expression Profile