RNA id: AMCG00011922



Basic Information


Item Value
RNA id AMCG00011922
length 612
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00011922
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6639722 ~ 6640333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGCCATCTGATGAAGACGCTGGAGGAGCTCTTCGGGACAGAGGTCTACAGATACAGCATTGTCCTGTTCACACACAGTGAGCAGGAGCGGGGAAGCTCGGCGAGGCTCAGAGAGGAGCACTGcacaggagcagcagcaggagacGTGTGGCACACATTGACGGGCACGGGGGCGGGGGGCAGGAGCCGGCTGCTGCAGAGCTGCGGGAACAGGGCCTGCATCCTGAACAACGGGGACCCCGGCGCGCGGGGGCAAGTGGTGGACCTGCTGGACAGGGTGGTGGCCATGGTGAGAGGAAACACCGGCGCCCACCTCACCTCCACGGAGTACCAGTGCACCGAGGAGAGGATCCGGGAGCGAGAGCAGGCGCTGAGGGATGCCCTGCAGCAGGAGCGCCAGAGGAGACTGGCGGAGGTGGAGGAGTGGCGGCGCAGAGAGGCCCAGCAGCTGGAAGAGACCCTGATGAAGCAGCTAAAGGATGGGAAGGCCTGGCTGAAGGAGCGTGcggagagggaggaggtggaGCTGCGACGCTTCTACACCGCCAAGCTGAGTGCAGTGAGGGAGGAGGCGGAGGGGCTGGTCCAGGAGACGCTGGCAGTGCCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167240 lncRNA upstream 50064 6589416 ~ 6589658 (+) True G133354
TU167234 lncRNA upstream 61712 6566859 ~ 6578010 (+) True G133350
TU167109 lncRNA upstream 292016 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 379354 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 415203 6224306 ~ 6224519 (+) True G133248
TU167247 lncRNA downstream 8377 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 36183 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 74025 6714358 ~ 6717923 (+) True G133440
TU167409 lncRNA downstream 93899 6734232 ~ 6734963 (+) True G133465
TU167439 lncRNA downstream 109326 6749659 ~ 6750920 (+) True G133491
AMCG00011907 mRNA upstream 71697 6567167 ~ 6568025 (+) True AMCG00011907
AMCG00011910 mRNA upstream 75907 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011909 mRNA upstream 79060 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011908 mRNA upstream 108686 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011906 mRNA upstream 136047 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011917 mRNA downstream 4543 6644876 ~ 6653731 (+) True AMCG00011917
AMCG00011932 mRNA downstream 61580 6701913 ~ 6706375 (+) True AMCG00011932
AMCG00011923 mRNA downstream 135372 6775705 ~ 6780766 (+) True AMCG00011923
AMCG00011938 mRNA downstream 181340 6821673 ~ 6823491 (+) True AMCG00011938
AMCG00011933 mRNA downstream 219541 6859874 ~ 6862669 (+) True AMCG00011933
TU167225 other upstream 81237 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 150514 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 383040 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 751830 5887005 ~ 5887892 (+) False AMCG00011837
TU167596 other downstream 596608 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 864749 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 924475 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 925054 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 1320365 7960698 ~ 7970918 (+) False AMCG00011986

Expression Profile