RNA id: AMCG00012086


Basic Information

Item Value
RNA id AMCG00012086
length 2640
RNA type mRNA
GC content 0.56
exon number 23
gene id AMCG00012086
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10551670 ~ 10564853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTTCTTCCAGCCGAAAGCcgtgaaggagaagaaggacgAGAAGGAGAAGGGAAAGAAGGATAAGGTGGCCAAGAGGAGCCGGCCAATCATAGACAGCGAAGACGAGGAGGAGTCAAGTATCAAAGAGGAATCGGAGAACAAGaaggaaaatggaaatgaacCTGTGCCCCAAACCACTGAGAAACAGaacTCGCAGACGTCACCTGCCCCTTCGGGGAAAAGTGCCACTGCTCCAGTCATCAGCTCCTCTGCAGACAGCTCCCCCACCACTGGGACAGCAAGCGTCTCTCCCTCGGGGATCCCCAAAAGACGCACTGCCAAGAAGCCCAAAGGGGAGAAGTCACCCAAGCGCCAGGCGGGAGGAGATGCCAAACGGCAGAAAGACGGGAGCTCGGGCACCGAAGAGGAAGAGCAGGCCTCTCCGAAGAGGATGTCGGACAGCAAGAAAGAGCAGCAGTCGCCCAAACCAGATGTGAAGAAGGCAAAGTCGCCCAAACCGGATGTGAAGAAGGCAAAGTTGCTCAAACAGGAAGCGAAGAAGGCAAAGTCGCCTAAAAAGGAGGAGCAGGAAGAGGAAGGGGACAATGGGAATGTGGAAGAGACTGAAAAGATGGAACCAGCCAAGAGCAAACCTATCAGCAGCTTTTTCGCTCCCAAGAAGGCAGCCGTGAAACTGGAGAAAGCGGAAGAGAAGCCAGCCAATACACTCTCCTCACCAGAGGGCAGTGGGAGTAAAGAAGCCAAGCCGGCCAGTTTCTTTGGCAAGTCAGCGAAGACCGAGTCCTCTTCAGGTACCTCCACAGATTATGACCCCTCCAATCCGAAGTACCACCCAGTGGAAGATGCCTGCTGGAGTCAAGGCCAGAAAGTTCCTTACCTGGCTGTTGCGAGAACCTTCGAGAAGATTGAAGAAGAATCTGCCAGGCTCAGGATCATAGAGATGCTGGCCAACCTCTTCCGCTCAATCATTGCCCTCTCCCCCGCCGACCTTCTGCCCTGCCTGTACCTGTGCCTGAACCGCCTGGGGCCGGCCTTCGCTGGGCTGGAGCTGGGGGTGGGAGAGACTGTGCTCATGAAAGCTGTGGCCCAGGCTACAGGGCGCCAGCTGGACAAGATCAAGGCGGAGGCCCAGGAGAAAGGGGACCTGGGATTGGTGGCTGAGAGTTCCCGAAGCAACCAGCGCATGATGTTCACACCCCCGAAGCTGACGGCCGTGGGGGTCTTCAACAAGCTGACGGAAATTGCAAAGATGACAGGCAATGCATCAATGAACAAAAAGATCGACATCATCAAGGGTCTGTTTGTGGCCTGCCGTTTATCAGAAGCCCGCTATATCATCAGGTCTCTGGGTGGGAAGCTGCGTATCGGCCTGGCGGAGCAGTCTATCCTGGTCGCCCTCGCGCAGGCCGTCTGCCTGACTCCCCCGGGACAAGAATTCCCGCCGAAGGAGGTGAATGCTGGGAAGGGGATGTTGGCAGAATCTCGGAAAGCCTGGCTGGACGAGAAAGCGCTCATCCTTAAACAGACTTATTGCGAGCTGCCCAACTATGATGTCATCCTTCCAGTCCTGCTGACAGAAGGGATTGACGAACTGCCGAAGCACTGCAAGCTCACGCCTGTCATGAAGAGGTTCGACGAGGCGGCCTTTACCTGCGAGTACAAGTACGATGGCGAGAGAGCCCAGATCCACATCCTTGAGAATGGAGAGGTCCACATTTACAgcaggaaccaggagaacaacaCCACCAAGTACCCCGACATCATCTCCAGAATACCTCGGGTCAAGAAGGAGGGCGTGCGCTCCTGCATTGTGGATGCCGAGGCTGTGGCCTGGGACCGGGAGAAGAAACAGATCCAGCCCTTCCAAGTGCTGACGACGCGCAAGAGGAAGTCGCTGGTGCGGGAGCCCCTGTTGAAGCGGCGCGCCCTTCTGAAGGAGAGCTTCGAGGAGAAAGAGGGCGAGTTCGTCTTCGCCAGCGCCCTCGACTCCGACAACACCGATGTCATCGCCGAGTTCCTGGAGCAGTCCGTCAGAGACTCCTGCGAGGGGCTGATGGTGAAAACTCTGGAGAAGGACGCCACGTACGAGATTGCAAAACGCTCCCACAACTGGCTCAAGCTGAAGAAAGATTACCTGGAAGGTGTGGGTGACACTCTGGACCTGGTGGTGATAGGAGCCTTCTTGGGCAAAGGCAAGAGAACTGGGACGTATGGCGGGTTTCTGCTGGCCTGCTATGATGACGAGAATGAGGAATACCAGTCAATCTGCAAGATCGGCACAGGATTTAAAGATGAAGATCTGGAGCAACATTACAACTTTCTGAAGgaacACACTCTGCCTAAGCCCCGCCCTTATTACCGTGTGGACCAGTCAACAGAGCCAGATGTGTGGTTGGAGGCAGTGCAGGTGTGGGAAGTGAAGTGTGCCGACCTGTCACTGTCCCCGGTTCACAAAGCAGCAATGGGATTGGTTGACCCAGAGAAAGGGATCTCCCTGCGCTTCCCTCGCTTCTTGAGGATCAGAGACGACAAGAAACCAGAAGATGGCACCACTGGGGGGCAGGTAGCAGATCTGTACagaaagcagcagcagatcCAGAACCAGGGCAGTGAGAAAGCCGACCTCGAGGACTTCTAC

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006260 DNA replication biological_process
GO:0051103 DNA ligation involved in DNA repair biological_process
GO:0003910 DNA ligase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10747 LIG1; DNA ligase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168615 lncRNA upstream 123146 9886858 ~ 10428524 (+) False G134346
TU168654 lncRNA upstream 281616 10269680 ~ 10270054 (+) True G134378
TU168643 lncRNA upstream 306941 10194394 ~ 10244729 (+) True G134369
TU168606 lncRNA upstream 350700 10199151 ~ 10200970 (+) True G134339
TU168619 lncRNA upstream 370963 9958351 ~ 10180707 (+) False G134350
TU168804 lncRNA downstream 29996 10594849 ~ 10595406 (+) True G134495
TU168807 lncRNA downstream 33686 10598539 ~ 10598841 (+) True G134498
TU168833 lncRNA downstream 68655 10633508 ~ 10684097 (+) True AMCG00012088
TU168877 lncRNA downstream 285005 10849858 ~ 10853291 (+) True G134556
TU168958 lncRNA downstream 368862 10933715 ~ 10935107 (+) False G134613
AMCG00012087 mRNA upstream 5725 10543413 ~ 10545945 (+) True AMCG00012087
AMCG00012084 mRNA upstream 159072 10363956 ~ 10392598 (+) True AMCG00012084
AMCG00012083 mRNA upstream 197927 10338828 ~ 10353743 (+) True AMCG00012083
AMCG00012082 mRNA upstream 271138 10265100 ~ 10280532 (+) True AMCG00012082
AMCG00012078 mRNA upstream 451214 10098148 ~ 10100456 (+) True AMCG00012078
AMCG00012088 mRNA downstream 64831 10629684 ~ 10634699 (+) False AMCG00012088
AMCG00012089 mRNA downstream 95049 10659902 ~ 10668786 (+) True AMCG00012089
AMCG00012096 mRNA downstream 203191 10768044 ~ 10777082 (+) True AMCG00012096
AMCG00012097 mRNA downstream 229033 10793886 ~ 10796475 (+) True AMCG00012097
AMCG00012098 mRNA downstream 238515 10803368 ~ 10804229 (+) True AMCG00012098
TU168610 other upstream 233852 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 243831 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 292446 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 411213 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 417078 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 361753 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 677376 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 681829 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 719897 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 871526 11436379 ~ 11446163 (+) True G134743

Expression Profile