RNA id: TU168643


Basic Information

Item Value
RNA id TU168643
length 283
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G134369
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10194394 ~ 10244729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCTTCAGCTCTCAGGGTCTTCAGCTCAAGATATGCATTAGAGGAACTGTCTGTGGACACAAGTGATCGCCCTTGAATTGACTGGGCATAGCTTGGATATTGATTGTCTCCTCTGATGTAGGCTAACCACTCCAAACCCTTTCCAGGAGTTTGCTGAATCCAAGATATGTACCAGCTGCTACTTAAAGTAAATCCTGAAACCTGACAGGACAGTTTCACGGTGTCTCCGGGCTTTCTGATCTCTGAGCCTGGCTGAGTCAAGACAATATCCGTCCGCACac

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168619 lncRNA upstream 13687 9958351 ~ 10180707 (+) False G134350
TU168621 lncRNA upstream 17166 9958351 ~ 10177228 (+) True G134350
TU168608 lncRNA upstream 247905 9927912 ~ 9946489 (+) True G134341
TU168614 lncRNA upstream 248654 9886858 ~ 9945740 (+) True G134346
TU168586 lncRNA upstream 271377 9847522 ~ 9923017 (+) True G134335
TU168654 lncRNA downstream 24951 10269680 ~ 10270054 (+) True G134378
TU168804 lncRNA downstream 350120 10594849 ~ 10595406 (+) True G134495
TU168807 lncRNA downstream 353810 10598539 ~ 10598841 (+) True G134498
TU168833 lncRNA downstream 388779 10633508 ~ 10684097 (+) True AMCG00012088
TU168877 lncRNA downstream 605129 10849858 ~ 10853291 (+) True G134556
AMCG00012078 mRNA upstream 93938 10098148 ~ 10100456 (+) True AMCG00012078
AMCG00012079 mRNA upstream 119652 10067556 ~ 10074742 (+) True AMCG00012079
AMCG00012074 mRNA upstream 178203 10014844 ~ 10016191 (+) True AMCG00012074
AMCG00012076 mRNA upstream 190303 9999738 ~ 10004091 (+) True AMCG00012076
AMCG00012075 mRNA upstream 194665 9979890 ~ 9999729 (+) True AMCG00012075
AMCG00012082 mRNA downstream 20371 10265100 ~ 10280532 (+) True AMCG00012082
AMCG00012083 mRNA downstream 94099 10338828 ~ 10353743 (+) True AMCG00012083
AMCG00012084 mRNA downstream 119227 10363956 ~ 10392598 (+) True AMCG00012084
AMCG00012087 mRNA downstream 298684 10543413 ~ 10545945 (+) True AMCG00012087
AMCG00012086 mRNA downstream 306941 10551670 ~ 10564853 (+) True AMCG00012086
TU168639 other upstream 53937 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 59802 10134027 ~ 10134592 (+) True G134365
TU168629 other upstream 159701 10034186 ~ 10034693 (+) True G134357
TU168607 other upstream 257983 9935926 ~ 9936411 (+) True G134340
TU168605 other upstream 327251 9852890 ~ 9867143 (+) True G134338
TU168648 other downstream 8081 10252810 ~ 10307839 (+) True G134373
TU168610 other downstream 58544 10303273 ~ 10317818 (+) True G134343
TU168966 other downstream 681877 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 997500 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 1001953 11246682 ~ 11290522 (+) True G134697

Expression Profile