RNA id: AMCG00012725


Basic Information

Item Value
RNA id AMCG00012725
length 3976
RNA type mRNA
GC content 0.47
exon number 28
gene id AMCG00012725
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5695131 ~ 5724754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATAATATGGATATTTTGGCCGAGGAGTTTGGGGATTTGGGCCCCCAGCAGCTCGCTGCTCCTGTGAATACAGTAGAGGAAAAATGGAAGCTGCTGCCAGCCTTTCTGAAGgtgAAAGGGCTGGTTAAACAGCACATTGACTcgttcaattattttattaatgtagaGATCAAGAAAATCATGAAAGCGAATGAAAAGATTACCAGTGATGCTGATCCAATGTGGTATTTGAAGTACCTCAATATTTACGTTGGAATGCCTGACGTCGAAGAAAGCTTCAATGTAACCAGACCTGTGTCTCCTCATGAGTGCCGCCTTAGGGATATGACCTACTCTGCCCCCATTACTGTGGACATTGAATATACCCGTGGAAGTCAGAGGATCATCCGAAATGCTCTGCCCATTGGAAGAATGCCCATCATGCTGCGCAGCTCCAACTGTGTCCTGACCGGAAAGTCTCCTGCCGAGTTCTCCAAACTGAACGAGTGTCCGCTTGACCCAGGTGGTTACTTCATCGTGAAGGGTCAAGAAAAGGTCATCCTGATACAGGAGCAGCTGTCCAAAAACCGAATTATAGTGGAGGCAGACAGGAAAGGGGCTGTGGGGGCCTCTGTAACCAGTTCCACACATGAGAAGAAAAGCAGAACCAACATGGCAGTGAAACAAGGACGGTTTTACCTGAGACACAACACTCTTTCTGAGGACGCACCCATTGCCATTATCTTCAAGGCCATGGGGGTGGAGAGTGACCAGGAGATTGTCCAGATGATTGGCACAGAGGAGCACGTCATGGCAGCCTTTGCCCCCAGCCTGGAGGAGTGTCAAAAAGCACAGATCTTCACACAGACGCAGGCACTGAAATACATCGGCAATAAAGTCCGCCGGCAGCGAATGTGGGGAGGACCCAAGAAAACCAAGATGGAAGAAGCCAGAGAGTTGTTGGCCTCCACCATTCTGACCCACGTGCCTGTGAAAGAGTTTAACTTCCGGGCAAAGTGCATTTACCTGGCTGTGATGGTCCGCAGGGTGATTTTGGCTCAAGGGGAAAACAAGGTGGATGACCGGGACTACTATGGCAACAAGCGTCTGGAATTAGCTGGGCAGCTGCTGTCCCTCTTGTTTGAAGACCTGTTCAAAAAGTTCAACTCTGAGCTAAAGAAGATTTCTGACCAGATCATCCCTAAGCAGAGAGCGGCGCAGTTCGACGTGGTGAAACACATGAGGCAGGACCAGATCACAAACGGAATGGTCAACGCCATATCTACAGGTAACTGGTCACTGAAGAGGTTTAAGATGGACCGCCAGGGAGTGACCCAGGTGCTGTCTCGACTCTCCTACATCTCGGCCCTGGGCATGATGACCAGAATCTCTTCACAGTTTGAGAAGACAAGGAAAGCCTGCGGTCTGGTAAAAAACCTGGCTTTGATGACCCATATCACCACAGACATGGAAGATGGCCCGATTGTCAAATTGGCCTTTAACCTAGGAGTGGAAGATGTCAATCTCCTGTGTGGCGAAGAGCTGTCTTACCCTAACGTTTTCCTTGTGTTCCTGAATGGTAACATCCTCGGGGTCATCAGAGATCACCCAAACCTTGTGAATACCTTCCGTCTGATGAGGCGAGCCGGGTTCATTAATGAGTTTGTGTCCATATCCACCAACCTGACTGACCGCTGTGTGTACATCTCCTCTGATGGAGGGAGGCTGTGCAGgccatacattattgtaaagaaaggaaaacctgctgtaaaaaacaaacacattgaagAGCTATCCCAAGGATACAGGAACTTTGAAGACTTTCTTCACGAAAGTTTGGTAGAATATCTTGATGTCAACGAGGAGAATGATTGCAACATTGCACTTTATGAACATATGATTACCAAagaTACCACACACTTGGAAATCGAGCCATTCACATTGTTGGGCGTGTGTGCGGGCCTGATTCCATACCCTCATCACAATCAGTCCCCCAGAAACACATACCAGTGTGCTATGGGCAAGCAAGCTATGGGAACCATTGGATACAATCAGAGGAACAGGATCGATACACTGATGTACCTGCTAGCCTATCCACAGAAGCCCATGGTGAAGACCAAAACTATTGAGCTGATTGACTTTGAGAAACTGCCAGCAGGCCAGAACGCCACGGTGGCCGTGATGAGCTACAGTGGCTATGACATTGAGGATGCCCTGGTGTTAAATAAAGCCTCTTTGGACAGAGGTTTTGGAAGATGCCTTGTGTACAAGAATGCAAAATGCACTCTGAAGCGATACACTAACCAGACCTTTGATAAAGTCATGGGTCCGATGCTGGATGCAGCTACAAGAAAACCCATTTGGAGGCATGAGATACTAGATGCAGATGGCATTTGCTCTCCCGGTGAGAAGGTGGAGAACAAGCAGGTGCTGGTGAATAAGTCCATGCCCACTGTCACCCAGACTCCACTGGAGGGCAGTGCCCATCCCCAGCAGCCCCAGTACAGGGATGTGCCAATCACTTACAAAGGCTCAACCAACTCCTATATTGAGAAAGTGATGATTTCCTCCAATGCGGACGATGCCTTTTTGATCAAAATTCTGCTGCGACAAACCAGGAGGCCTGAGATCGGTGATAAATTCAGCAGTCGTCATGGCCAGAAAGgtgtgtgtgggCTCATTGTTCCTCAGGAGGACATGCCTTTCTGTGACTCTGGAATCTGCCCTGACATCATCATGAATCCGCACGGTTACCCTTCCCGTATGACGGTCGGGAAACTGATTGAGCTCCTGGCAGGCAAGGCAGGGGTTTTGGATGGCCGCTTTCATTATGGTACGGCCTTTGGAGGCAGCAAAGTAAAAGATGTCTGTGAAGACCTTATCCACTACGGCTATAACTATTTGGGAAAAGATTATGTGACATCTGGCATCACAGGAGAACCACTGGAAGCCTATATTTACTTTGGTCCAGTTTACTACCAGAAGCTGAAGCACATGGTTCTCGACAAGATGCATGCCAGGGCCCGAGGCCCAAGAGCTGTTCTGACCCGCCAGCCCACAGAAGGTCGATCCAGAGACGGTGGCCTGCGTCTGGGTGAGATGGAGCGGGACTGCCTGATTGGCTATGGAGCCAGCATGCTCCTGCTGGAACGGCTGATGATATCCAGCGATGCCTTTGAGGTGGATGTGTGTGGGCAGTGCGGGCTGTTGGGATACTCCGGCTGGTGCCATTATTGTAAGTCTTCTTGCCATGTGTCCTCCCTACGAATCCCTTATGCCTGTAAGCTGCTCTTCCAGGAACTCCAGTCTATGAACATTGTGCCCAGGTTAAAACTGTCACGATACAACGAGTGAAGAACTCATACCTTGATCCTTGCAGTGCTGCATCAGATATTCAACAGGAGGGATGGATTGGTGCATAAGATATGTATAGTGTTTTGGAAACTTGAAGCGCACAGTCCATCTTTGACATTGACTCTCAACACTtgtactatttttgttttgaaaagcagtTAAGTTAACCTGAAAGCTAGATGATAACTTTTTGgaacaaagttttgatttttgtgTAAGTTCAACTACGTTAATTTAGCTAATCGCAGTTCAAATATTTTTGAACTGGTATTTAGTGTATTTGGTCTTCGCTTAACTAAGGTTGCTTTTGTTGCTCACATATATGAGTGGACTATGGTGAATAAAAGGAGACTGAATACTTGACATTGATgtcaaggaaataaaatatatttcttacatGCTGGAGagtactgtacatacagtaaagctgtatattgttttatatgaaaaacTGGACACCTAAAACCAtggcaaaataatgttttccttttcatttttgtaaagaGTTGGAGAATGTTTCATTTTGGAAGGAATAAATTATGAAAGTATAACTGTTGCTATCAGTGTTCATACTAATGTCATGAGGGGTAAGACTCCTTTCTTCTTCGGGAATGTTATTggagaggattttttttttttttt

Function

GO: NA

KEGG:

id description
K03021 RPC2, POLR3B; DNA-directed RNA polymerase III subunit RPC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49015 lncRNA upstream 47024 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 257969 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 621005 5037547 ~ 5074126 (+) True G39193
TU48821 lncRNA upstream 739264 4949240 ~ 4955867 (+) True G39186
TU48563 lncRNA upstream 1177500 4517136 ~ 4517631 (+) True G38964
TU49089 lncRNA downstream 197860 5922614 ~ 5923023 (+) True G39382
TU49104 lncRNA downstream 328394 6053148 ~ 6056572 (+) True AMCG00012734
TU49169 lncRNA downstream 560180 6284934 ~ 6287936 (+) True G39445
TU49225 lncRNA downstream 787894 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 1037211 6761965 ~ 6762278 (+) True G39538
AMCG00012722 mRNA upstream 48504 5640001 ~ 5646627 (+) True AMCG00012722
AMCG00012717 mRNA upstream 64012 5630403 ~ 5631119 (+) True AMCG00012717
AMCG00012723 mRNA upstream 65589 5603313 ~ 5629542 (+) True AMCG00012723
AMCG00012733 mRNA upstream 187130 5507669 ~ 5508001 (+) True AMCG00012733
AMCG00012719 mRNA upstream 382613 5305061 ~ 5312518 (+) True AMCG00012719
AMCG00012721 mRNA downstream 7236 5731990 ~ 5763147 (+) True AMCG00012721
AMCG00012720 mRNA downstream 42452 5767206 ~ 5791485 (+) True AMCG00012720
AMCG00012718 mRNA downstream 83103 5807857 ~ 5823515 (+) True AMCG00012718
AMCG00012729 mRNA downstream 307999 6032753 ~ 6039590 (+) True AMCG00012729
AMCG00012734 mRNA downstream 328488 6053242 ~ 6056832 (+) False AMCG00012734
TU48986 other upstream 142364 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1321557 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 4870423 820524 ~ 824708 (+) False AMCG00012639
TU49057 other downstream 83092 5807846 ~ 5823320 (+) False AMCG00012718
TU49223 other downstream 792654 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 2000734 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 2110592 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 3387706 9112460 ~ 9113101 (+) False AMCG00012820

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026331 True 3393 mRNA 0.49 28 NC_007129.7 15382029 ~ 15420168 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_06765502_06790599.mRNA True 3618 mRNA 0.47 26 CI01000013 6765502 ~ 6790923 (+)