RNA id: AMCG00013720


Basic Information

Item Value
RNA id AMCG00013720
length 2856
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00013720
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39789632 ~ 39897168 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCCATTGGCcatgaatgccttgaagccggGGAATGCCATAATACAGAACTCCAAGTTCAGGGTGTACTCTGGCCTGTGGGATTCCACGGCACAGGACCACCACCAGGTAGACAAACGCCAGCTTGCTCAGGATGAGGTCATTGGGGAGAAGCCGGCCATCAGACAGACGCAGATGGAAGTGCGTCTTGTGCTGAAGGCAGCTGGCTTCATCTGTCTGGATGTGGTGGGCATCCCAGGGAACCTGACCGTACTCCTGTTCTTCTGCTACCTGCGTCTGTCTGATGGCCGGCTTCTCCCCAATGACGTCATCCTGAGCAAGCTGGCGTTTGTCAACCTGGTGGTGGTCCTGTGCCGTGGAATCCCACAGGCCTTAACTGCACTTGGCATCCAGAACCTCTTTGGGGAATATGGCTGCAAAGTGGTCATCTTCACATACCGAATAGGCCGTGCCATGTCCATCTGTATCACCTCCCTCCTCAGCTGCTACCAATGCATAGTCATCGCCCCTGGATCAACACGGTGGATGGTGCTGAAGCAGAGGGTCCCCAGAAGCATCCCCCTGATCATCTTGCTGCTCTACGGGCTGAATTTTATGTTGTGCCCTGCTGGATTTGTCTATGCTTCAACAGTTCCCAACTCCACCATCCCAGAGTACACCCTGAACTTGGAGTTCTGTATTGTGGCATTCCctggcttcaaggcattcatgGCCAATGGAGTCATGCATATAATTcgtgattttgtgtttgtgggcATCATGGCTGGTGCAGCCATTTATATTGTCCAGATTCTTTACCACCATAGGAAGCAGATGAGGGGCATGCATGGCTCGGATCGGAACCAGAAAAAAACGGCAGAGGCGTCCAAGTCATTGCTCATACTTGTGGCCATGTATGTCATCCTGTTTGGCCTGGACAATGGCAGGACAAAGAGCCATGACAGGGATACAGTACCGAGGGAGGGCAACTGTGGCACTACACAGTCGGTGGATGATAGAGCAAGAGGCCGAATGCCCGATGACCACCACCAGGTTGACAAACGCCAGCTTGCTCAGGATGAGGTCGTTGGGGAGAAGCCGGCCATCGGACAGACGCAGGTAGCAGAAGAACAGGAGCACGGTCAGGTTCCCTGGGATGCCCACCACGTCCAGACAGATGAAGCCAGCTGCCTTCACCACAAGACGCACTTCCATCTTCTAGAGAAACTAGTCCAGCAAAATTGTGGTAGGGGCCTGTGGGATTCCACGGCACAGGACTACCACCAGGTTGACAAACGCCAGCTTGCTCAGGATGAGGTCATTGGGCAGAAGCCGGCCATCGGACAGACGCAGGTAGCAGAAGAACAGGAGCACGtttgtgaTCAACAATCCCAGGGCATCTTGAAGGACGATGCCCGTGGCCGGCCCGGGTTCCACGATCTCAGAGGGCTGGGTCAGGGCGCTGCCAAGAAACAGCAGGAAGAGTTCGGCATTGACATCACGAACATTGAAAGGAGCAAGTATGTATCAAAAGTCTTGTTTTCTGCTATACACTATGACACCTACTTCACAACCCTGTGGAATCAGGACAATGTAGAAGCCTGCACCAGCCATGATGCCCACAAAGACAAAATCACGAAGTATGACCACCACCAGGTTGACAAACGCCAGCTTGATCAGGATGAGGTCGTTGGGGAGAAGCCGGCCCTCAGACAGACGCAGGTAGTAGAAGAACAGGAGCACGGTCAGGTTCCCTGGGATGCCCACCACGTCCAGACAGATGAAGCCAGCTGCCTTCAGCACAAGACGCACTTCCATCTTCTAAAGAAACTGACCTGCAATAGTCCAGCAAATTGTGATAAGGATGAGGatctctctcacacagcacTGGTATTCTCCATTCTGCCTCTGGCTATGAATTCGCAGGCCATCATCAGAGGGGTGCTATACCTGACCCTGACATTGCTGGGGGTGCCAGGCAACCTGTTGGTGATGTGGGCATTCTGCCATTTGGCCCTCTGCGACCGTAAGCTGCTGCCAGCTGACGCCATCGTTCTGCACCTGGCCAGTGTTAACTTCCTGGTGGTGGCGGTGCGCTGCTTCCTGGAGATGCTGGCAGCCTTCAGCATCGCCAACGTCTTCAATGACACCGGCTGCAAGAGCGTCATTTTCATCTACAGGACGTCCCGTGCGCTCTCCATCTGGCTGACCTGCGTGTTGAGCGGCTTCCAGTGTGTCAGCATCGCCCCCCCGGGGTCCCGCTGGTCAGGCGTCAAAACACATGCTCCTCGTTACCTAGGGGGcatcttcctcttcctctgggTGCTGAACACCAGCATCAGCTCTCCCTCCGTGGTTTTCTCCATGGGCTCCCACAATGACTCCACCCAGATGGAGCACAGCATCAACGTGGAGTTCTGCTTCGTCCGCTTCCCCAGCAGTACAGTGAAGCAAGCTAATGGGGCGGTGCAAGTGGTCCGGGACGTGGTGCCCATCTTCCTCATGGTCCTAGCCAGCCTCTTTATCCTGGTCTTCCTGTATCGGCACAGCCAGCAGGTCAAGAGCATCCGTAGCGCCAAGCAGAACCAGAAGCAGTCGGCCGAGACGCGGGCAGCCAAAACGGTGGTGACCCTGGTGACACTGTACGTGCTGTTCTACGGTATTGACAATGTGCTGTGGATCTACACGCTGACCGTTACCCAGACCATGAGCTCCTCCCTCGTCTCTGACCTGCGCATCTTCTTCTCTTCCTTGTACGCTGCCGTCAGTCCCATCATCATCATCGCCTCTAACAAGAAGGTAAACAGCCGGCTCACCTGTGTGAGACCCGAGAAGGGCCCCCAGAGCATGGACACAACTCTCTCCACGCTCTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 850121 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1090400 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1116161 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1168289 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1199473 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 469298 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 488866 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 494720 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 519464 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 985681 40882849 ~ 40885629 (+) True G46455
AMCG00013724 mRNA upstream 9442 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013721 mRNA upstream 10578 39761180 ~ 39779054 (+) True AMCG00013721
AMCG00013719 mRNA upstream 34927 39753734 ~ 39754705 (+) True AMCG00013719
AMCG00013712 mRNA upstream 44109 39737727 ~ 39745523 (+) True AMCG00013712
AMCG00013711 mRNA upstream 57518 39716967 ~ 39732114 (+) True AMCG00013711
AMCG00013725 mRNA downstream 214626 40111794 ~ 40120125 (+) True AMCG00013725
AMCG00013727 mRNA downstream 286767 40183935 ~ 40271437 (+) True AMCG00013727
AMCG00013726 mRNA downstream 430730 40327898 ~ 40341318 (+) True AMCG00013726
AMCG00013729 mRNA downstream 480564 40377732 ~ 40388323 (+) False AMCG00013729
AMCG00013728 mRNA downstream 548481 40445649 ~ 40467813 (+) True AMCG00013728
TU57658 other upstream 227332 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 967679 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1224638 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1416434 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1558302 38230566 ~ 38231330 (+) True G45850
TU57778 other downstream 453484 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2530933 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2530933 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2530933 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2747819 42644987 ~ 42648754 (+) True G46723

Expression Profile