RNA id: AMCG00013725


Basic Information

Item Value
RNA id AMCG00013725
length 1407
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00013725
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40111794 ~ 40120125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGCCGGTTATATGTTCGAAGGACTTTTCCATGCATCCCGAGAGGGGCTCCGTGTTCCCTGGGTTTTTGCCTACTTGTTTTGCTGATCCTCTCCCCGACACCTTGTAGCAGCCAGGCCAGCCTCATCAGCTTTCACACAGAGAATCGGGACTGGTCCTTCAACCACCTCACGGTGCACCAGAAGACAGGAACACTGTACCTTGGTGCTGTGAACCGGGTCTACAAGCTTTCAGGCAACCTGACCCTCCTGGTGTCCCACAACACAGGGCCAGAGGATGACAACAAGTCCTGCTACCCACCCCTCATCGTACAGCCCTGTAACGAGCCCCTGACGGCCACCAACAATGTCAACAAACTGCTACTCATCGACTACTCCCAGAACCGGCTGCTGGCCTGCGGGAGCCTCTACCAGGGGGTCTGCAAACTGCTGCGCCTAGATGATCTGTTTGTGCTGGTGGAGCCCTCTCACAAGAAGGAGCACTACCTGTCCAGTGTGAATGAGACCGGCACCATGTATGGGGTGATCGTGCCATCCAAGGGCGAGGACGGCACGCTCTTCATCGGCACGGCCGTGGATGGCAAGCAGGACTATTTCCCCACCATTTCCAGCCGCAAGCTTCCCAAGGACCCCGAGTCGTCGGCCATGCTGGACTATGAGCTGCACAGCGACTTCGTGTCCTCCCTCATCAAGATCCCTTCCGACACCCTGGCGCTCATCTCGCACTTCGACATCTTCTACGTTTATGGCTTCTCCAGTGGCAACTTTGTCTACTTCCTCACTGTCCAACCCGAGACCCCGGAGAACAACATGCCCTCGGGGGGCTCCTCCAACGACCTCTTCTACACCTCGCGCATCGTGCGGCTCTGCAAGGACGACCACAAGTTCCACTCCTACGTCTCGCTGCCCGTGGGCTGCATCCGCAACGGAGTAGAATACCGCCTGCTGCAGGCTGCCTACCTGTCCAAGCCCGGGGAGGTGCTGGCCGCCTCCCTCAACATCTCTGCCCAGGACGACGTGCTCTTTGCCGTCTTCTCCAAGGGGCAGAAGCAGTACCGCCGCCCCCCCGATGACTCGGCCCTCTGCGTCTTCACCATCAGGGACATCAATGCCCGCATCAAAGAACGCCTGCAGTCCTGCTACCAGGGAGAGGGCAACCTGGAGCTCAACTGGCTGCTGGGCAAGGATGTCCAGTGCACCAAGGCGCCTGTGCCCATCGACGACACTTTCTGTGGCCTTGATATCAATCAGCCCCTGGGAGGCTCTCAGCTGGTGGCCGGCCTGACTCTCTTCACCGAGATCCGGGACCGCATGACCTCAGTGGCCTCCTACATCTACAACGGCTACTGCGTGGCCTTCGTGGGAACCAAGAGTGGCCGGCTAAAGAAGGTAGGTCTGGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 1172283 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1412562 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1438323 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1490451 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1521635 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 246341 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 265909 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 271763 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 296507 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 762724 40882849 ~ 40885629 (+) True G46455
AMCG00013720 mRNA upstream 214626 39789632 ~ 39897168 (+) True AMCG00013720
AMCG00013724 mRNA upstream 331604 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013721 mRNA upstream 332740 39761180 ~ 39779054 (+) True AMCG00013721
AMCG00013719 mRNA upstream 357089 39753734 ~ 39754705 (+) True AMCG00013719
AMCG00013712 mRNA upstream 366271 39737727 ~ 39745523 (+) True AMCG00013712
AMCG00013727 mRNA downstream 63810 40183935 ~ 40271437 (+) True AMCG00013727
AMCG00013726 mRNA downstream 207773 40327898 ~ 40341318 (+) True AMCG00013726
AMCG00013729 mRNA downstream 257607 40377732 ~ 40388323 (+) False AMCG00013729
AMCG00013728 mRNA downstream 325524 40445649 ~ 40467813 (+) True AMCG00013728
AMCG00013734 mRNA downstream 354900 40475025 ~ 40478788 (+) True AMCG00013734
TU57658 other upstream 549494 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 1289841 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1546800 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1738596 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1880464 38230566 ~ 38231330 (+) True G45850
TU57778 other downstream 230527 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2307976 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2307976 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2307976 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2524862 42644987 ~ 42648754 (+) True G46723

Expression Profile