RNA id: AMCG00013727


Basic Information

Item Value
RNA id AMCG00013727
length 5180
RNA type mRNA
GC content 0.57
exon number 29
gene id AMCG00013727
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40183935 ~ 40271437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGATGGCCCATTCCCGGGTCAACTCGGGGGTGACACGGGTGCCCATCGAGTCCTGTGAGCAGTACACCACCTGCGGAGAGTGCCTGAGCTCGGGAGACCCTCACTGTGGCTGGTGTGTCCTACACAACATGTGCTCCCGCAAGGATCGGTGTGAGCGGGCCGAGGAGCCGTTCCGCTTCGCTGCCGCCATCAACCAGTGCGTGAGAGTGACAGTGCAGCCCGACAGCATTGCTGTCTCCGAGCACAGCGTGCCGCTGATTGTGAAGGTCAGCGACGTACCCGACCTCTCAGCCGGCATCACCTGCTCGTTCGGGAACCTGACTGAGGTCGAAGGTCAGGTGTCTGGGAATGAaattctctgtgtgtctccagcGGCCAAGGACGTGCCACTCATACCCACTGACCAAGACTGGTTTGGCGTGGAACTGCGGCTGAATTCAAAGGAGACGGGCCAGATGTTGACCAGCACGGAGTTCAAATTCTACAACTGCAGCGTCCACCAGTTGTGTCTATCCTGCGTGAACAGTGCCTTCCGCTGCCATTGGTGTAAATACCGCAACCTGTGCACCCACGATCCCACCAGCTGCTCCTTCCAAGAGGGCCGAGTCAACGCCTCCGAGGACTGCCCCCAACTGGTGCGCTCTGAGGAGATCCTGATCCCGGTGGGCGAGGTGAAGCCCATCACCCTGAAGGCGCGGAACCTCCCCCAGCCGCAGTCGGGCCAGCGTGGTTACGAGTGCGTGCTGCACATCCAGGGAGTCAGCCACCGCGTGCCGGCACTGCGCTTCAACAGCTCCAGCGTGCAGTGCCAGAACAGCTCGTATCTCTATGAGGGAATGAAGATCAGTGACCTGGCAGTGGACTTCTCTGTGGTCTGGAATGGCAATTTCATCATCGACAATCCCGAGAGCATTAAAGTTCACCTGTACAAGTGCGCCGCCCAAAGGGACAGCTGTGGGATGTGCCTGAAGGCGGAGAGGAAGTTCGAATGCGGCTGGTGTAGCGGCGAGGTCAGCTGCACCCTGCGCCAGCACTGCCCACCCTTCGCCAACCAGTGGCTGGACCTGTCGAGCAAGAACGTCAAGTGCACCAACCCCCGCATCACCGAGgtgacTCCAGTGGCCGGACCACCCGAGGGGGGGACCCGGGTGACAATCCACGGCGTGAACCTGGGCCTGGCCTTCTCGGAGATCGAGGGGAACgtgcaggtggctggggtgcCCTGCACTCCCCAGGAGGACGGCTATGTCATCGCTGAGCAGATCGTGTGCGAGATGGGCGAGACACCTCCCGAAACCCAGCCCGGCCCGGTCCAGCTGTGCATTGGCGAGTGCAGGCCGGAGCTGAAGACCCGGTCCTCCCAGCTCTACTCCTTTGTGATGCCTTCAGTGCAGGGCGTCTCCCCCAGCAGAGGGCCCGAGTCGGGTGGCACCAAGGTCACCATCCTGGGAGAGAACCTGGGCGCGGGCAGCAGCGTGTCGGTGCTCTTCGGGAACCAGACCTGCGAACGGACGATGACGGAGATCGTGTGCTACTCCGCCCCCTCTCTGAAGGGCACTGGCACGGAAGACATCACCGTGAGTGTGGACCGGGCCAGGGCCGGCGAGAGCCTGCAGTTCGAGTACATCGACGACCCCACCGTGCAGCGCATCGAGCCAGAGTGGAGCATCGCCAGTGGCCACACTCCGCTGACGGTGACGGGGACCAATCTGGACGTGGTGCAGGAGCCAAGGATTCGAGTGAAGTACAGCGGCCGTGAGTCCGTCAACGTGAGTCAAGGGGTTCTGGGCGGTGGAGAGTACCGGCCCGGGCTGGACGCAGTGGAGCGCGCCGATGAGTTTGGCTTTATCTTCAACAACGTCCAGGAGTTGCTCATCTACAACAACACCAACTTCATCTACTACCCCAACCCTTACTTCGAGCCCCTAAGCCCTGTCACCGGCATCCTGGAGCAGAAACCCGGCTCCCCCATCATCCTCAAGGGCAGGAATCTGGTGCCACCCGCCTCCGGAGGGGCCAAGCTAAACTACACTGTGCTGATTGGGGAGACGCCTTGTTCTGTCACCGTCTCAGAGACGCAGCTTCTCTGTGAACCCCCCAACCTCACTGGGCAGCACAAAGTTCTGGTCCAGGTGGGTGGTCTGCACGTGTCCCCGGGCTCGGTGCACATGCTCTCGGACAGCCTTCTCACCCTGCCCGCCATCGTCAGCATCGCGGCAGGAGGGGGGCTGCTGCTCATCATTGTCATCATCGTCCTCATCGCCTACAAGCGCAAGTCCCGCGAGAACGACCTCACGCTCAAGCGGCTGCAGATGCAGATGGACAACCTGGAGTCACGCGTGGCCCTGGAGTGCAAGGAAGCCTTCGCCGAGCTGCAGACGGACATTAACGAGCTGACCAGTGATCTGGACCGAGCCGGCATCCCGCACCTAGACTATCGCACGTACGCCATGCGCGTGCTGTTCCCCGGCATCGAGGACCACCCGGTGCTCAGGGAGCTGGAGGTCCCTGGGAATGGGCAGCTGAACGTGGAGAAAGCGTTGAAGATGTTCGGCCAGCTCATCAACAACAAGGTGTTCCTGCTGACCTTCATCCGCACGCTGGAGCTCCAGCGCAGCTTCTCCATGAGGGACCGCGGCAATGTGGCCTCGCTCATCATGACCGCGCTGCAGGGCCGGCTGGAATACGCCACAGACGTGCTCAAGCACCTGCTGTCGGACCTCATCGAGAAGAACCTGGAGAGCAAGAATCATCCCAAACTGCTGCTGAGGAGAACCGAGTCCGTCGCAGAGAAGATGTTAACCAATTGGTTTGCCTTCCTACTACACAAATTCCTCAAGGAGTGCGCCGGGGAGCCTCTGTTCATGCTGTACTGCGCCATCAAGCAGCAGATGGAGAAAGGACCCATCGACGCCATCACGGGAGAGGCACGCTACTCCCTGAGTGAAGACAAGCTCATCCGCCAGCAGATCGAGTACAAGACCCTGatCCTGAACTGCGTGAACCCGGACAACGAGAACAGCCCCGAGATCCCGGTCAAGGTGCTCAACTGCGACACCATCACACAAGTGAAGGAGAAGATCCTGGACGCGGTCTACAAGAACATGCCCTACTCTCAGAGGCCCCGCGCTGTGGACATGGACCTGGAGTGGCGTCAGGGCAGGATGGCACGGGTGGTGCTGCAGGATGAAGATATCACCACCAAGATCGAGAATGACTGGAAGCGCCTCAACACCCTCATGCACTATCAGGTGTCAGACCGCTGCGTGGTGGCCCTGGTCCCCAAACAGACATCGTCCTACAACATCCCCCCCTCCGCCAGCATATCCCGCACCTCCATCAGTCGATACGACTCCACGTTCCGGTACACGGGCAGCCCCGACAGCCTGCGCTCCCGCGCCCCTATGATCACCCCCGACCTGGAGAGCGGGGTAAAGGTGTGGCACCTGGTGAAGAACCACGAACACGGGGACCAGAAGGAGGGCGACCGGGGCAGCAAAATGGTCTCTGAGATCTACCTGACCCGTCTACTCGCAACCAAGGGCACACTGCAGAAGTTCGTGGACGATCTGTTCGAGACGCTGTTCAGCACGGTGCACCGGGGCAGCGCCCTGCCCCTCGCCATCAAATACATGTTCGACTTCCTGGATGAGCAGGCGGACAAACACAGCATCCACGATACAGACGTCAGACACACGTGGAAGAGCAACTGCCTTCCACTGAGGTTCTGGGTGAACGTCATCAAGAACCCGCAGTTCGTCTTCGACATCCACAAGAGCAGCATCACGGATGCATGCCTGTCGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACATCTGAGCACCGGCTGGGCAAGGACTCGCCCTCAAACAAGCTGCTGTACTATGCTGATATCAGCCGGCTGCCCGCCATCAGTGATCAGGACATGAACGCCTACCTTGCCGAGCAGGCACGGCTGCACTCCACCGAGTTCAACATGCTGAGCGCGCTCAACGAGATCTACTCCTATGTGAACAAGTACAGTGAAGAGATCACCTCCGCTCTGGAGCAGGACGAGCAGGCACGGAAACAGCGGCTGGCCTACAAGGTGGAGCAGTTGATCGGGGCCATGTCCTTAGAGAGCTGAGACTCGAGAGACTGCGTTCTCCGTCCACCCAATATCACCCCCGTCCCCCGTCCCCCCtcgccaccaccaccacaaagTCATGGGTGACACTGCTGGGATGAGAAACAAAAGACAGtgctctttttttgtgtgtgtgtctcgatttttttgtatttatttgaagggAAAAACGAGACAATGCCATCTCCACGAGACTATCTGAGGACTCCCTAAGTGCCATGGATTCTATGGCCAGagccttttattttcattgtcattGTTGTGATTTTTGAAAGTGGAGAGTTCCTGTGGTGTCACgacttccttttttttctgtggctGCTCTGCATTTCATTGAAAGATCTCCTGCAGCCGCCTGAGGGGCTTTCATGGGTGGAGAGGTGACTGTGATCGCAGGCCGTATCGGAGAAGGAGACTGGGGGGCGGGGACACTTCTGCCCCCACGCCCTTTTGCATGGAagtccagagctgtatatgctgAAGCTGAGTGTGCTcttaaaactacatttattttttatacagttcttTTTTGtcgttgtttttttctctacacAACTTGGACTCAAAACAGCTGTTACATTGtcgttgtttttttaagtctgCCAAGTGTTTAACTGTGagtgaaatacttttttttgtttgtttttcatggaaaaaaaaagactggtaCTCTGGTAATTGTGCTCTTCAAGATGCCAGATGTCTTGTGAGCTGCTACCACAAGtttgcacttaaaaaaacaaaacaaaaactgttacGCCTCCTACTCACACAGGTCCAAGAGATGAAATGAAAGATGAATACATGTACTGCTGGTATTGCTTTCTGCAGACTGTCCACACAAGTTTCACTCAGTCAGAGTCTCCATGAGCCTTGCGCCCCCCAGCCCTGATGGGACACTGCGGGGGCAGGACGGGCGCGGGGCAGGCTGGGTGCGGGTGCTTCCGGGTCAGGCTGAACCACCGCTGTTCTCCTATTTTAAAACTCTCCttagaagatttttttttttctcaagacATGCAACTGcaacattttcatgtttgttc

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06820 PLXNA; plexin A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57522 lncRNA upstream 1244424 38934463 ~ 38939511 (+) True G46138
TU57375 lncRNA upstream 1484703 38656596 ~ 38699232 (+) False AMCG00013672
TU57394 lncRNA upstream 1510464 38645278 ~ 38673471 (+) False AMCG00013665
TU57381 lncRNA upstream 1562592 38590755 ~ 38621343 (+) True G46035
TU57380 lncRNA upstream 1593776 38588879 ~ 38590159 (+) True G46034
TU57779 lncRNA downstream 95029 40366466 ~ 40373800 (+) True G46345
TU57790 lncRNA downstream 114597 40386034 ~ 40389941 (+) True AMCG00013729
TU57791 lncRNA downstream 120451 40391888 ~ 40412672 (+) True G46355
TU57796 lncRNA downstream 145195 40416632 ~ 40425507 (+) True G46360
TU57909 lncRNA downstream 611412 40882849 ~ 40885629 (+) True G46455
AMCG00013725 mRNA upstream 63810 40111794 ~ 40120125 (+) True AMCG00013725
AMCG00013720 mRNA upstream 286767 39789632 ~ 39897168 (+) True AMCG00013720
AMCG00013724 mRNA upstream 403745 39779219 ~ 39780190 (+) True AMCG00013724
AMCG00013721 mRNA upstream 404881 39761180 ~ 39779054 (+) True AMCG00013721
AMCG00013719 mRNA upstream 429230 39753734 ~ 39754705 (+) True AMCG00013719
AMCG00013726 mRNA downstream 56461 40327898 ~ 40341318 (+) True AMCG00013726
AMCG00013729 mRNA downstream 106295 40377732 ~ 40388323 (+) False AMCG00013729
AMCG00013728 mRNA downstream 174212 40445649 ~ 40467813 (+) True AMCG00013728
AMCG00013734 mRNA downstream 203588 40475025 ~ 40478788 (+) True AMCG00013734
AMCG00013731 mRNA downstream 284240 40555677 ~ 40604675 (+) True AMCG00013731
TU57658 other upstream 621635 39561973 ~ 39562300 (+) True G46244
TU57427 other upstream 1361982 38819409 ~ 38821953 (+) False AMCG00013681
TU57357 other upstream 1618941 38564498 ~ 38564994 (+) False AMCG00013654
TU57196 other upstream 1810737 38370656 ~ 38373198 (+) True G45894
TU57149 other upstream 1952605 38230566 ~ 38231330 (+) True G45850
TU57778 other downstream 79215 40350652 ~ 40373160 (+) False G46345
TU58194 other downstream 2156664 42428101 ~ 42441245 (+) False AMCG00013770
TU58195 other downstream 2156664 42428101 ~ 42441245 (+) False AMCG00013770
TU58196 other downstream 2156664 42428101 ~ 42441245 (+) False AMCG00013770
TU58242 other downstream 2373550 42644987 ~ 42648754 (+) True G46723

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044366 True 6103 mRNA 0.51 32 NC_007134.7 32579495 ~ 33038423 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_02983105_03176041.mRNA True 5712 mRNA 0.51 31 CI01000020 2983105 ~ 3176041 (+)