RNA id: AMCG00014681


Basic Information

Item Value
RNA id AMCG00014681
length 1518
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00014681
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26859733 ~ 26866240 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTCTGTGCAGGAGTTGGACTCCGAGGCCAGCCGCCGCGCAGCCGCACAGCCGCACAGCTACACCGCAGCCGCACAGCCCGCACAGCCGCACAGCTACACCGCAGCCGCACAGCCGCACAGCCGCACAGCTACACCGCAGCCGCACAGCCTGCACAGCTACACCGCAGCCGCACAGATACACCGCAGCCGCACAGCCCGCACAGCCCGCACAGCTACACCGCAGCCGCACAGCCCGCACAGCCGCACAGCTACACCGCAGCCGCACAGCCGCACAGCCCGCACAGCCGCACAGCTACACCGCATCGCCGGCGGAGAGATGCAGCACCGCGCCTACCAACCCGTGCTTCCATGTGGAAACAAATATCTACAGCAGAAATGGGACCGAGCGGACTATGACGCGCACAGGAGAAAGgtGAAGTCCGCAAAACCTACGTTGAACACGACCTCGCCTCAATCATACGGCCACATggaacttaaaatgaaaaagctgcagCTGGAGGTAGAGCGCCTGACTATTATCCAACGAGACAATAACATGCTTCTGGGGAAGATTTCTTACATTATGAGGTCCACGGGTCGTATTGACAACAGGAATGACTACGAATATAAAAGTCTGGGCAGAGAGAAGAGGCAGCAAGAGCTGCTGCGCATCACCAGGGAGAACGAGAGCATCTTGGAGCGGATCTCCCGCTGTGGGCCGCAGTACACCTCAGAGAAGTGGCGCGAGGACTGGCGCCGGACTGAGAAGCTCCGGGAGAGCATCGCACGGTATCCCCGCAGCTGGAACAGCGCCGGCCCCAACAAGaccaAACCCAAGTCctccaagaaaacaaaggaagtcCAGAAAGACAAGGAAAGAGAAACAGATctgaatggagagagagaagacggTCCTGATCGGCCACAGGAGAGGTGTGCCACAGAAGTAGACCGacaggaagagggagagggcagCCCTGCAACACAGAAACCGGAGGAAACGCACGATCAGACTGCACACAACAGTGACCAAGAGGACACTGACCAAGAATGATGGTCAGGCAAATGATTTTGtacacaacaaaaagaaaccaaCCAGGAGTTTTAACTGctgctgatttgttttatttcttcttgaGCTCAATTGTCATAGAAGCAGGTTTctctcaattaatttaaactatagttattttgtaattactaattttttgttgtgtatatattatatatatatatattgtgacagtaTGTGGGGTTGAGTTTGGCGTCTAGGCTCCATGAccgaaataaatacaaaaaacaaacaaaaccctaaCTCTTTTTAAgcctaaatgtgaatatatatacgCATGCACCTGATATACACCTTAATTTCTTGACTTGTTTTATGatctaattataaaatataaagaatgtaATTCCAATATTTGTAGTAATTGTATcatcataattcataataaaaagtGTTAGATATGAATCTGACATTCATTAGTTTATATTTGAATCAGGTAAAATTGTGCAGCAAAATGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 628168 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 848733 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 900031 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 1089244 25770209 ~ 25770489 (+) True G71784
TU89729 lncRNA upstream 1111325 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 38637 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 86056 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 160535 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 608824 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1374326 28240566 ~ 28297484 (+) True G72169
AMCG00014677 mRNA upstream 231026 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014676 mRNA upstream 271339 26585481 ~ 26588394 (+) True AMCG00014676
AMCG00014670 mRNA upstream 450642 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014669 mRNA upstream 470510 26373224 ~ 26389223 (+) True AMCG00014669
AMCG00014668 mRNA upstream 524372 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014682 mRNA downstream 2986 26869226 ~ 26881796 (+) True AMCG00014682
AMCG00014680 mRNA downstream 20247 26886487 ~ 26890130 (+) True AMCG00014680
AMCG00014684 mRNA downstream 24492 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014687 mRNA downstream 42118 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014685 mRNA downstream 59594 26925834 ~ 26961877 (+) True AMCG00014685
TU89430 other upstream 4004087 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8585373 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9411280 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10390620 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10726931 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 969263 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1002463 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1436133 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2985210 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3898111 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile