RNA id: AMCG00014682


Basic Information

Item Value
RNA id AMCG00014682
length 2156
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00014682
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26869226 ~ 26881796 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTGTAACACCGCCGGTACTACAGAAGTCGCGGGATCGGATGATAATTACATTTaggcggtgtgtgtgtgtgtgtttgtttctaaaccttacttttttattttttaaatatagcatGGCAAACTTTTGAGTCCTTAAGGAATAAGTGCAACGATCACCATGAACCTGGACCGACTGCGGAAGCGTGTCCGTCACTATATCGATCAGCAACAGTATCAAAGTGCCCTGTTTTGGGCGGACAAAATTGCATCACTGTCTCACGAGGACCCCCAAGACATTTACTGGCTGGCACAGTGCCTTTACCTCACATCACAGTACCACAGGGCCTCTCATGCTCTCCGGTCACGCAAACTAGACAAGGCGTATGGTGCGTGTCAGTATCTTGCTGCTAGATGTCAttatgctgCTAAAGAGTACCAGCAAGCTCTTGACATCCTTGACATGGAAGAGCTGGCTAGTAAGAAGTTGCTCGACAAAACAAGTGCAAAGGAGGATAATGGCATCAAAGAGGCTGCCAAGGACTGGGGCATGTCTTCCTCCTCAATCAACAGCTCTATCTGCCTTCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTGGCAACTTCCAGCTACAAAGAGGCCTTGAAGCTAGACGTGTACTGCTTTGAAGCCTTTGACCTTTTAACGTCACATCATATGCTGACAGCTCAAGAAGaaaaagattTTTTGGAGTCCCTTCCTCTAAGTCAACAATGTACAGGAGAAGAACAGGAACTGCTACGTTTTCTTTTTGAAAGTAAATTGAAAAAGTATAACAAACCCAGTGAAACAGTGATCCCGGACACAGTGAATGGCCTTCAGGACAACTTGGATGTTGTAGTTTCTCTAGCAGAGAGACATTATTATAACTgtgattttaaaacatgctACAAACTCACGTCTATGGTGATGGTCAAAGATCCATTCCATGCCAATTGCCTCCCAGTACACATAGGAACACTGGTAGAACTCAGCAAAGCAAATGAGCTATTTTACCTGTCACACAAATTGGTGGATTTGTACCCAAATAGCCCAGTGTCATGGTTTGCTGTCGGATGCTATTATTTAATGGTTGGTCACAAAAACGAGCATGCAAGAAGATACCTTAGTAAAGCCACCACTCTGGAGCGGACATATGGCCCTGCTTGGATTGCCTACGGGCACTCTTTTGCGGTGGAGAGTGAACATGACCAAGCCATGGCAGCTTACTTCACTGCTGCGCAGCTCATGAAGGGGTGCCATCTCCCAATGCTCTACATCGGTCTGGAGTACGGTCTGACCAACAACTCCAGGCTGGCCGAGAAGTTTTTCAGCCAGGCCCTCAGCATCGCTCCAGAGGATCCTTTTGTGATGCACGAAGTTGGAGTGGTGGCCTTCCAGAACGAAGAGAAGTACGACCAGGCTTTGGAGTATCATCGACAGGCTCTCGTGCTCATCCCCCAGCATGCTTCCACATACTCTGCTATTGGATATGTGCACAGCCTCATGGGAGACTTCGAGAGTGCAATTGACTATTTTCACACAGCTCTCGGTCTTAAAAGGGATGACACGTTTTCTGTGACGATGCTGGCGCACTGCATTGAGATGTACATTGGAGATGCCGACGCTTACATAGGGACTGACATCAAGGACCAGCTGCGCAGTACGCTGAGCACTCCGGCCCTGATGAAGATGCTCAACCACAGTTCGGTGGACAGCAGCGAGTTCAGGCCCCAGCCTCTGGAGGAGAGCGGCATCATGGCTCTCGAGACATCGCCCCACCCTGACAAATCCACCGAGGCTGCTCCACGGCCCTACGTGCCCCTGGAGTTTGACATGTACGAAAGCGATATGATGTTAGAGACCTCCATGTCTGACACCAGCACGTGATGGCCGAGGCCTGCCGCCTTCCTGGGGTCATTGCGAAGTGTGACTTCCCCTGAGACAGTGGGCCGAGACTGACCCGAACCACCCTGACCAGGGGAGGAAACGCAGCGGCCGTGAACGTCCACCCTCTCAATTGTCACTCTcaagccagctatgtattactTACCTGTGGATTTTTACatcattgaataaataaaatgacctgAACAGATTGGCAGTTTTCCAGCTAATGCATTGATATAATAAACGGcatgtgaattta

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
K03353 APC6, CDC16; anaphase-promoting complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89834 lncRNA upstream 637661 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 858226 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 909524 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 1098737 25770209 ~ 25770489 (+) True G71784
TU89729 lncRNA upstream 1120818 25745803 ~ 25748408 (+) True G71772
TU89946 lncRNA downstream 23081 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 70500 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 144979 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 593268 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 1358770 28240566 ~ 28297484 (+) True G72169
AMCG00014681 mRNA upstream 2986 26859733 ~ 26866240 (+) True AMCG00014681
AMCG00014677 mRNA upstream 240519 26624761 ~ 26628707 (+) True AMCG00014677
AMCG00014676 mRNA upstream 280832 26585481 ~ 26588394 (+) True AMCG00014676
AMCG00014670 mRNA upstream 460135 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014669 mRNA upstream 480003 26373224 ~ 26389223 (+) True AMCG00014669
AMCG00014680 mRNA downstream 4691 26886487 ~ 26890130 (+) True AMCG00014680
AMCG00014684 mRNA downstream 8936 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014687 mRNA downstream 26562 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014685 mRNA downstream 44038 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014683 mRNA downstream 84949 26966745 ~ 26974382 (+) True AMCG00014683
TU89430 other upstream 4013580 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 8594866 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9420773 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10400113 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10736424 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 953707 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 986907 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 1420577 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2969654 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3882555 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074575 False 2236 mRNA 0.45 18 NC_007120.7 34920001 ~ 34937256 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_03633868_03640910.mRNA True 2015 mRNA 0.46 18 CI01000009 3633704 ~ 3640910 (-)
mexican tetra (Astyanax mexicanus) TU231780 True 1308 lncRNA 0.46 6 NC_035915.1 31957167 ~ 31960193 (-)