RNA id: AMCG00014803


Basic Information

Item Value
RNA id AMCG00014803
length 1326
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00014803
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31766064 ~ 31769661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATACCAGCTCCACTGCCCACCTGAATCTCATCTACAACCTTCTAGCACGCCACCAGGAGGCCTTGGTTGGTCACAGCTTCTACGGGCGTCTGCAAGCACAGTCACCCATTTCCTGCCCGCATTCGCTGCTCATTGAACTGCTCACTTATCTTTGCCTGAACTTCTTGAGGTCCTACTACCCCTGCTACCTTTCCATAGGTCACCGGGACCTCCTGGGAAACCGAGAGGTGCAGGTCAAGAGCGTGGAAGTTCTGATACGACTGATGAGCCAGCTGGTGATGGTGGCCAAAGCCCAAGATGGCAGGAGGCTGGATTTCATAAAGAAGCTCCTGTCCAGTTGCAGAGTGCAGCAGTACgtcttgctctccctctctgcctcaaTGTACGTCAACCAAAAGTCTGCATTGGTGGACAAGGGCGAGGACTCCATGGAATATGGCCTGTCCGAGGAGAGCCTGATCAACTTTGGTCAGGACCAGATCTGGAGTGAGCACCCCCTGCAGATTGAGCTTCTCAAGCTGCTGCAGGTGCTGATTGTGCTAGAAAGCCACCTCCAAGGAAACGCAGCAGAGGAACAAGAGGCCTCCTCCCCACTTGCCAAGGAATGGCAGACAGCCGTACACTTCCAGCAGTCCATAAAGGCCATGCAGTATGTCCAGACCCAGCCCATCACGTTGCAGGGCATGTTCGTATCGGCTGTGGTCCAGGCTCTGCAGCCGCAATACGGCTACGGAATGCACCCTCCTTGGGTGGGCCTGCTCACCAGCTCGCTGCCATACCTGGGCAGATCTCTGGGAATGACCGTGGCCCCCTTCATTGCTCAGATCTGCAAGAACCTGGATGAACTGGTCAAGCAATACGAGCACGAAGCAGTAAAGACGGCCCTGAACCTATCctcaaaaagagaaaacatcGCCCCGGATTACCCCCTCACTCTTCTTGAAGGTCTGACTGCGATCACCCACTTCTGCCTCTTGGAGAACTCCAGTGCTCAAAGGAAGTCCTCTGTGATCACGGACCCGGCGGACTTCCGAAATGCCCGCAACGCCATTGTGGAGGAGTTGCCTCGCATCATGAGCACCATGGCGCTGCTCTGGGGAGTCATCAGGAAGGAGGAATTGCAGAAGATGACTTCAAACTTGGGCCCAGGAGTCTGCAAGAACACTTCCACCTCCGTCTACTTCAAAAGCACCAAAATCCTAAAACAGAAGATGTTGGACTTCTTGAACCCAGTCACAGCGCAGTACGGCGTGCAAGTGATGGCGTCTGTGGCGGCTGTGTGGAACAGCAGGAAGAGCCGAAAGAGCCACAGCAAAACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91145 lncRNA upstream 19164 31745523 ~ 31746900 (+) True G72926
TU91127 lncRNA upstream 62491 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 63629 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 173959 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 242877 31520346 ~ 31523187 (+) True AMCG00014793
TU91158 lncRNA downstream 21240 31790901 ~ 31792354 (+) False AMCG00014799
TU91238 lncRNA downstream 186591 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 196261 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 197695 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 202324 31971985 ~ 31995538 (+) True G73019
AMCG00014805 mRNA upstream 1026 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014804 mRNA upstream 2229 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014798 mRNA upstream 24714 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014801 mRNA upstream 56545 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014800 mRNA upstream 69891 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014799 mRNA downstream 21292 31790953 ~ 31798463 (+) True AMCG00014799
AMCG00014802 mRNA downstream 33269 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014807 mRNA downstream 95470 31865131 ~ 31890448 (+) True AMCG00014807
AMCG00014808 mRNA downstream 127279 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014811 mRNA downstream 169892 31939553 ~ 31962971 (+) False AMCG00014811
TU91144 other upstream 11134 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 769701 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 785812 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 787239 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 960323 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 772849 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1595094 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2469273 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3010461 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3172350 34942011 ~ 34960447 (+) True G73343

Expression Profile