RNA id: TU124430


Basic Information

Item Value
RNA id TU124430
length 621
RNA type TUCP
GC content 0.53
exon number 3
gene id G99605
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16017583 ~ 16102456 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttaatgtttttttttatttttttatttatttttttacagaaagcaAATGGAAAGGCACAATATAGTATTTCAAGCAGTACACTTTTTTCTCTGATTGATGCTTTAAAAGTGTGTTGTGCGAGGTGTGTCCTGCAGGTGGTTTGTGTTGCCATTATAGCAGGATTGTAGCAGAGCAGAGGTGGCTGGTGAGATTCAGGGCCAGTGAGCAGATCACGTGGGCTGTAATGCAGAGAGACTGAGCTGCGAGCAATTGTGTTTGTCTCTTTTGCATATGACTGTTTGACTCTCTTCCTCTCTACCCCCCGTGGCAGCGCTGGTAGGTGATGAAGGTGGCGCAGTTTTTGACCCCCAGATCTCTCAGGCTCTTTTTCAGGTCCACTGACTTCCCCTGCAGCGCCAGTGCCAGCTCAGCACCCCCTGCTCCTGCCCCGCCACGGCCCCAGCCCTGCTTCTCCCGCAGCCGCCAGCACAGCTCCCCTGCGGTGTCCGAGCGCTGCATCACCAGGCTCTCCCTGCGCCCTGAGCTCCCATCTATCACCACCACTGTCACCTCAGAGCTCTCGGGCTCCGGCAGGGACACCCGCAGAGAGGTGTGGGAGAGagagagaacagg

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124406 lncRNA downstream 13553 15999802 ~ 16004030 (-) False G99596
TU124405 lncRNA downstream 13553 16001183 ~ 16004030 (-) True G99596
TU124396 lncRNA downstream 27320 15987084 ~ 15990263 (-) True G99594
TU124372 lncRNA downstream 57752 15902451 ~ 15959831 (-) True G99576
TU124360 lncRNA downstream 134062 15879418 ~ 15883521 (-) True G99565
TU124452 lncRNA upstream 27608 16130064 ~ 16130295 (-) True G99623
TU124513 lncRNA upstream 209252 16311708 ~ 16311970 (-) True G99679
TU124575 lncRNA upstream 322294 16424750 ~ 16428626 (-) True G99724
TU124598 lncRNA upstream 368451 16470907 ~ 16473177 (-) True AMCG00015681
TU124602 lncRNA upstream 395029 16497485 ~ 16498531 (-) True G99735
AMCG00015667 mRNA downstream 203224 15792513 ~ 15814359 (-) True AMCG00015667
AMCG00015666 mRNA downstream 314462 15687642 ~ 15703121 (-) False AMCG00015666
AMCG00015664 mRNA downstream 459807 15555165 ~ 15557776 (-) True AMCG00015664
AMCG00015662 mRNA downstream 678521 15338036 ~ 15339062 (-) True AMCG00015662
AMCG00015660 mRNA downstream 764862 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015676 mRNA upstream 149963 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015677 mRNA upstream 213032 16315488 ~ 16324527 (-) True AMCG00015677
AMCG00015680 mRNA upstream 343516 16445972 ~ 16448187 (-) True AMCG00015680
AMCG00015683 mRNA upstream 358266 16460722 ~ 16463940 (-) True AMCG00015683
AMCG00015681 mRNA upstream 364843 16467299 ~ 16470946 (-) False AMCG00015681
TU124288 other downstream 314293 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 757099 15259461 ~ 15260484 (-) True G99454
TU124167 other downstream 828189 15102617 ~ 15189394 (-) True G99426
TU124175 other downstream 845911 15170615 ~ 15171672 (-) False AMCG00015659
TU124012 other downstream 1279309 14690387 ~ 14738274 (-) False AMCG00015645
TU124478 other upstream 119309 16221765 ~ 16222155 (-) True G99646
TU124562 other upstream 426921 16529377 ~ 16535468 (-) True AMCG00015691
TU124837 other upstream 1735124 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2525887 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3872500 19974956 ~ 19976069 (-) False AMCG00015752

Expression Profile