RNA id: TU13308



Basic Information


Item Value
RNA id TU13308
length 422
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G10735
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4354853 ~ 4355296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctggcccaggtgatttgtttgtttttaattctgctagtccctttagtacctcctcctcatttatcctgatctctcttagggtttgactggactgattgtcaacctgtggcatgtcatctgttttttcttttgtaaaaacctctgtgaaatactcatttagaatatttgccacatcttgttcgttttccaagatacctccatttttgccctttaactgtttcacctcctccttttttgaccgcttgctgttgtaatattcaaaaaagctctttgcatgtttctttctatttccctctttgctttcctgatccctttcttaagatctctttgcagctcaacatattctatgtattttgtttcatcaccatcccttttgtatgcgctatacaacattttcttcctctttatattttttgcatacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13286 lncRNA downstream 184515 4166778 ~ 4170338 (-) True G10715
TU13268 lncRNA downstream 366898 3987653 ~ 3987955 (-) True G10698
TU13266 lncRNA downstream 375736 3977559 ~ 3979117 (-) True G10696
TU13262 lncRNA downstream 381342 3971886 ~ 3973511 (-) True G10692
TU13241 lncRNA downstream 442581 3869724 ~ 3912272 (-) True G10673
TU13313 lncRNA upstream 16169 4371465 ~ 4373721 (-) True G10740
TU13391 lncRNA upstream 231427 4586723 ~ 4587875 (-) True G10805
TU13392 lncRNA upstream 236524 4591820 ~ 4592077 (-) True G10806
TU13398 lncRNA upstream 267435 4622731 ~ 4623216 (-) True G10812
TU13410 lncRNA upstream 283154 4638450 ~ 4638659 (-) True G10821
AMCG00016053 mRNA downstream 249122 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016048 mRNA downstream 407418 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016049 mRNA downstream 434350 3886298 ~ 3920503 (-) True AMCG00016049
AMCG00016050 mRNA downstream 519498 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 570357 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016058 mRNA upstream 21149 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 69692 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 88120 4443416 ~ 4451855 (-) True AMCG00016063
AMCG00016064 mRNA upstream 121043 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016062 mRNA upstream 152167 4507463 ~ 4517486 (-) True AMCG00016062
TU13237 other downstream 434429 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 815660 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1319670 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1644168 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3836250 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6491538 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6491635 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7967865 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8506803 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile