RNA id: TCONS_00009368


Basic Information

Item Value
RNA id TCONS_00009368
length 1510
lncRNA type lincRNA
GC content 0.36
exon number 3
gene id XLOC_004728
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25073305 ~ 25075120 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttaaaacgtTTTAGATATGTAATATGAACATCATTTTAAAGTTTTTGGTGCATTGATCAATTGTGTGAGCAGATTTTGAATTTGTGGTAACAAAAGCTTAGCTACGGTAATCATTTGCgtttttcttttagtttaatTTGTTGTGAAACTTTGGTAATGTGAATGTTctacaaattgtattttaatttaattttaaaatgtgttatctGCATTCATTTCTCTTAATAGATGAGGAGGAGGAAGTGAAAACTAAAAAGAGTAAGGTAGCAAAGTTCTTCAAAGCTACCACAAAACTCTTTGGGATGTCCTGCTTTCGTCAGGCTGAGGAGCAGCTCTCTGACTCTGAAGGCTCTGATGCAGATGACTTTCTGTGCCAATCCCAGTCTGATCAGAGTCTGGAGGTTGCTCCGGACATCGTTCATGAAGTGAGCTGTGTGATGGACGACCTAAAGGTGGACGAGACAAATGACTTGACACTCAACGTAGAGTACGTcaaaaaagaggaggaggaggagatgagAATGAATGATGAGAAGAACACAGAGGAGGACAAGATCAAaaagagaaagaggaggaggaggaatagGATGAAAGAGGAGAATGAGATGAAGATGAAAGAGGAGAGgttgacagaaaatgaagagaagGAGAAGAATGAGGAGATGGTGAAGATGAACaaggaaagaatgaaagaaaatgaaGAGAAAGAGGAGAAGAATGAGGAGATGGTGAAGATGAACaaggaaagaatgaaagaaaatgaaGAGAAGGAGAAGAAGAATGAGGAGATGGTGAAGATGAACAAGGACAGAATGAAAGAAAATGAAGAGAAAGAGGAGAAGAATGAGGAGATGGTGAAGATGAACAAGGACAGAATGAAAGAAAATGAAGAGAAGGAGGAGAAGAATAAGGAGATGGTGATAAAAGAGGAGATGATAACAGACAATGATGAGGTGGAGGAGGAGAATGAGGAAGAGAGGGAAAAGACAAAGGAGAAAGAGAAGAGAAAGGGAACAAAGAAAAGAAACAGCAAGATAATCAGACGAATGATGAGGAGGAGAAGCAAGAGAAGGAGAATGAGGAGAGTTTGaatcaaaataataattgaaaataaaaaaataaaaaaactggatggacaattctTAATTTATGGTCTAAAATATTAATATGCAAAAAAATTGCATGTCAAAAGAGTGCATGAACTGCTCTATCTTTCTGGCCTATAGTTAATGTGCACAAATAGTTGTACACAAAAGGGCAAGCACAACACAAGCTctactgaaaaaagaaaacactaagGGCACATTAACTTGATCAAAACAGTAATAAAAGTGAATTAATCAATGAGGACATGAAGagcacactgttaacaatttcctgtagaatctacaataACTCACTGGCAGCAGTTCAACAGTAATTTACTGCAAATCAGCAAGAATACTGATATTTATCTGCAATACGTGTATCTATAGTATTGTATTTCTTTACTGTAAAATctacagtcat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194949

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010738 lncRNA upstream 128801 24944172 ~ 24944504 (+) True XLOC_004726
TCONS_00010737 lncRNA upstream 1213873 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00010736 lncRNA upstream 1294128 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00010935 lncRNA upstream 1422249 23649892 ~ 23651056 (+) True XLOC_004713
TCONS_00010933 lncRNA upstream 1467583 23589024 ~ 23605722 (+) False XLOC_004711
TCONS_00009371 lncRNA downstream 126423 25201543 ~ 25214727 (+) False XLOC_004731
TCONS_00010936 lncRNA downstream 130411 25205531 ~ 25214727 (+) False XLOC_004731
TCONS_00010937 lncRNA downstream 134891 25210011 ~ 25214727 (+) True XLOC_004731
TCONS_00009376 lncRNA downstream 236898 25312018 ~ 25420721 (+) False XLOC_004733
TCONS_00010938 lncRNA downstream 304969 25380089 ~ 25430371 (+) False XLOC_004733
TCONS_00009367 mRNA upstream 114513 24952902 ~ 24958792 (+) False XLOC_004727
TCONS_00009366 mRNA upstream 114513 24952902 ~ 24958792 (+) True XLOC_004727
TCONS_00009365 mRNA upstream 303115 24738962 ~ 24770190 (+) True XLOC_004725
TCONS_00009358 mRNA upstream 432966 24344963 ~ 24640339 (+) False XLOC_004722
TCONS_00009369 mRNA downstream 10631 25085751 ~ 25092570 (+) True XLOC_004729
TCONS_00009370 mRNA downstream 22634 25097754 ~ 25110974 (+) True XLOC_004730
TCONS_00009373 mRNA downstream 148723 25223843 ~ 25267129 (+) False XLOC_004732
TCONS_00009374 mRNA downstream 148753 25223873 ~ 25267131 (+) False XLOC_004732
TCONS_00009375 mRNA downstream 148753 25223873 ~ 25284510 (+) True XLOC_004732
TCONS_00009364 other upstream 507713 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 654965 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009355 other upstream 727812 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009353 other upstream 858788 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009349 other upstream 1141290 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009372 other downstream 148679 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009380 other downstream 393192 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009383 other downstream 573007 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009419 other downstream 2059749 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 2081823 27156943 ~ 27163064 (+) False XLOC_004764

Expression Profile

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