RNA id: AMCG00017592


Basic Information

Item Value
RNA id AMCG00017592
length 2631
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00017592
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12712157 ~ 12717400 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACTACAATTCAATTAGACCTAATAGACCTAAAGCACATCCTTGTAATACTGCAGAAACTACAGTACATGACATTCGAGCAATCCTTTACTCCTTTTCTTCAAACATGCTCTATCCTCTCGTggaaaaaaagtttacaaacattgttttatctGTGTATAACACTCCTCTCCATTGCTATTCGGGATCATCTTTATAGTTTAGTGCACATTCCAGGTGTCGGAACAGTTTATAgataaatgtttctgtaaacTAAAGATTTATGCACAGTATTCCTACTTCACTTTAATTATGACCACCGgtgtatgtacatttattaattgtattgtgtctgttttttgttttgtgtgtgtttcacctCCAAGTCATGTATACAAGCCTGATGAGAACAATCCCAATTTCCTGTGTCGGATCTGGAATGAAGTTTGATCATGGAGTCTCTGTCCAGTCACAGCTCCTACCTCCTACAGCAGCTCCACGAGCAGCGAATCCAGGGACTGTTATGTGACTGCATGTTGGTAGTCAAGGGTGTCTGTTTCAAGGCCCATAAAAATGTCTTGGCTGCCTTTAGCTCATATTTTAGGTCCTTGTTCCAGAACTCACCAGGACAGAAGAACGACGTGTTTCATCTTGACATTACAGACGTAGGAGGCATTGGGCAGATTCTGGATTTTATGTATACATCCCATCTCGACCTGAATCAGGACAACGTTCAGGCCCTGTTAGATGTGGCTCAGTGTCTGCAGGTCCCGAACGTGCTCAACATGTGCAATCATTTCCTGAAGCCCTACACTCCTGCCGTGGAAGCCCCAGGAAGCCTCCCTGGCAGTGCCTCGTTTTCTCTCCCGGCCGTTCTGACAATAGAGACTGAATGCATGCTCGGGGCCACTCTGCCTTCTGAGATGGGACTACACTGCCCCTCTGAGGCCCAGAAACCGGCCTGTGCGCCATCGGACATTGACCTTTCTAGGAGACCACAGGCCCTTTTGCAAACCCAGACCTTTGACGCTCTAAGCAGTGCCCCTGCTGCCCCTGATAAGCTGTCAACTCACACCTACAAGCTGCGTAACTTCTACagcaaacaatattttaaacaaaatccaGCATTAAATGGGAGTTTGAACCCACCGCTAAATACCGTGGCAGAGGAGCACTTCTCATCCAGTGTTACTGACTCAAACACTCCAGTTGATATACCAGTAGGTGCTGTGAATACTGCTTCTGAGTCTCAAGGCCCTGTGTCTACTTTTATGATGCCACCCGCAACAGAAGACTCTGAATGTCAGAGCTCTGGAGGGAAGAGTTCTCCCGTTAGTCGGCAAGTTCGGACAAAAAAGGCTGTCTATCTGAAGAAATACAACTACCTACGGTCCCAGAAAGCTTTGGAGGAATCTACATTGCAGCCAGCCAAGACGGACAACAAAACTCCAGTTGATGCAAATGAAGCCGAGGTTATAGACCAACATGTAGGTGACTTGCCTGGGGTTAGCCTAATGGAGGAAGAAGTAGGTGAACCTGCTAATGTGTCATGCTCCCAACTTGGAAGCTCCTCCCCTGCTCACCTGGAGGAGCCTGAGCACAATTTAGTAGCTAACTCCACAGATGCTGCCCTACTCCAGAACTACCAGAAGCAATATTGTTGTGAGATGTGTGGAAAGACATTCAAGCACCCCAGTAATCTGGAACTCCATAAGCGCTCACACACAGGTAATCTACAGACTCATTTACGGCGACACTCAGGCGAAAAACCATACATTTGTGAAATCTGCGGGAAAAGCTTCGCAGCCTCTGGTGACGTTCAGCGGCACATTGtgattcacacaggagagaaacctcATCTGTGTGACATCTGTGGCCGAGGGAAGAGTTTTGCCGGTTCTGGAGACTTGCGGAGACACGTGCGGACACACACGGGCGAGCGGCCCTACACTTGTGAGACCTGTGGCAAGTGCTTCACCCGCTCAGCTGTCCTGAGGAGACACAGGACCGTGCACTGCAAGAGCGCCCAGGACAGCCCGGCGGCGGAGGAGCTTGCCAGCGCGGTGGACAGCCCCTTCCTGCAGACGGTGTGCCACAAATCCCAGGACTCGGATTCTTTTGCGACCCTGATGTCAGACAAGCTGCCCCCGGCCCCGAGCGAGACCCCTCCGGGGGTTGACTTCGCCCCGGGCTCTTCGGCTTCCTTCTCCGAGCTCCGGTCCATGGTGCCTCACCACCTGATAGCTCAGCAGGACAAGTTGTGTCCGGATCCCATTAAACTCCCAAAGCCTCCTGATTCATTTGCATACACCGAGGAAAACAGCGCGAACAGCGAGGAGACGCTGCAGCCATCCAGCACGTCCATGATCCGCCCGTCCCTGACGGCGCTGGATAATCACTGCAGTCTCCCTGTGGGAAACCATCGCCTGAGTTCTGCCTCGTTCCGGAGCAATGAGGCGCCCTTCTTCTCCAGCGTGACACTGTGGGGATTAGCGATGAAGACGCTGCAAAATGATAACGAACTGGAGCAATAAATGGGCTAATTGCTAAATGTAAAAAGCTTGATTGTAAAGGTTTActgtaaaaaggaaaataaactaatctatatacacaaaatatttttttactgaattgTTTAAACATGAATGGAT

Function

GO: NA

KEGG:

id description
K24807 ZBTB49; zinc finger and BTB domain-containing protein 49

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114261 lncRNA upstream 1441 12707310 ~ 12710716 (+) True G91597
TU114199 lncRNA upstream 221861 12490083 ~ 12490296 (+) True G91549
TU114194 lncRNA upstream 276173 12435744 ~ 12435984 (+) True G91545
TU114123 lncRNA upstream 736545 11975409 ~ 11975612 (+) True G91490
TU114113 lncRNA upstream 775818 11936101 ~ 11936339 (+) True G91481
TU114286 lncRNA downstream 147787 12865187 ~ 12891356 (+) False G91619
TU114285 lncRNA downstream 172240 12889640 ~ 12891356 (+) True G91619
TU114318 lncRNA downstream 342456 13059856 ~ 13060646 (+) True G91649
TU114365 lncRNA downstream 423262 13140662 ~ 13140878 (+) True G91683
TU114374 lncRNA downstream 479495 13196895 ~ 13259572 (+) False AMCG00017600
AMCG00017586 mRNA upstream 147069 12546369 ~ 12565088 (+) True AMCG00017586
AMCG00017584 mRNA upstream 191094 12506590 ~ 12521063 (+) True AMCG00017584
AMCG00017583 mRNA upstream 222988 12472948 ~ 12489169 (+) True AMCG00017583
AMCG00017585 mRNA upstream 314404 12393280 ~ 12397753 (+) True AMCG00017585
AMCG00017580 mRNA upstream 534039 12173844 ~ 12178118 (+) True AMCG00017580
AMCG00017593 mRNA downstream 3841 12721241 ~ 12727616 (+) True AMCG00017593
AMCG00017596 mRNA downstream 146976 12864376 ~ 12865629 (+) True AMCG00017596
AMCG00017599 mRNA downstream 207450 12924850 ~ 12931836 (+) True AMCG00017599
AMCG00017597 mRNA downstream 233932 12951332 ~ 12970031 (+) True AMCG00017597
AMCG00017595 mRNA downstream 344341 13061741 ~ 13078027 (+) True AMCG00017595
TU114078 other upstream 831658 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 3128877 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 3958376 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 4022751 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 4579303 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 1319476 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 2359925 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 2395210 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 3149631 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 3417625 16135025 ~ 16135316 (+) True G92130

Expression Profile