Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00017596 |
| length | 828 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 2 |
| gene id | AMCG00017596 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 12864376 ~ 12865629 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K09341 | MSX; homeobox protein MSX |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU114261 | lncRNA | upstream | 153660 | 12707310 ~ 12710716 (+) | True | G91597 |
| TU114199 | lncRNA | upstream | 374080 | 12490083 ~ 12490296 (+) | True | G91549 |
| TU114194 | lncRNA | upstream | 428392 | 12435744 ~ 12435984 (+) | True | G91545 |
| TU114123 | lncRNA | upstream | 888764 | 11975409 ~ 11975612 (+) | True | G91490 |
| TU114113 | lncRNA | upstream | 928037 | 11936101 ~ 11936339 (+) | True | G91481 |
| TU114285 | lncRNA | downstream | 24011 | 12889640 ~ 12891356 (+) | True | G91619 |
| TU114318 | lncRNA | downstream | 194227 | 13059856 ~ 13060646 (+) | True | G91649 |
| TU114365 | lncRNA | downstream | 275033 | 13140662 ~ 13140878 (+) | True | G91683 |
| TU114374 | lncRNA | downstream | 331266 | 13196895 ~ 13259572 (+) | False | AMCG00017600 |
| TU114376 | lncRNA | downstream | 377948 | 13243577 ~ 13246653 (+) | False | AMCG00017600 |
| AMCG00017593 | mRNA | upstream | 136760 | 12721241 ~ 12727616 (+) | True | AMCG00017593 |
| AMCG00017592 | mRNA | upstream | 146976 | 12712157 ~ 12717400 (+) | True | AMCG00017592 |
| AMCG00017586 | mRNA | upstream | 299288 | 12546369 ~ 12565088 (+) | True | AMCG00017586 |
| AMCG00017584 | mRNA | upstream | 343313 | 12506590 ~ 12521063 (+) | True | AMCG00017584 |
| AMCG00017583 | mRNA | upstream | 375207 | 12472948 ~ 12489169 (+) | True | AMCG00017583 |
| AMCG00017599 | mRNA | downstream | 59221 | 12924850 ~ 12931836 (+) | True | AMCG00017599 |
| AMCG00017597 | mRNA | downstream | 85703 | 12951332 ~ 12970031 (+) | True | AMCG00017597 |
| AMCG00017595 | mRNA | downstream | 196112 | 13061741 ~ 13078027 (+) | True | AMCG00017595 |
| AMCG00017600 | mRNA | downstream | 377938 | 13243567 ~ 13259760 (+) | True | AMCG00017600 |
| AMCG00017610 | mRNA | downstream | 505986 | 13371615 ~ 13383451 (+) | True | AMCG00017610 |
| TU114078 | other | upstream | 983877 | 11879614 ~ 11880499 (+) | True | G91452 |
| TU113887 | other | upstream | 3281096 | 9519773 ~ 9583280 (+) | True | G91281 |
| TU113671 | other | upstream | 4110595 | 8751713 ~ 8753781 (+) | False | AMCG00017527 |
| TU113646 | other | upstream | 4174970 | 8687697 ~ 8689406 (+) | False | AMCG00017526 |
| TU113473 | other | upstream | 4731522 | 8132368 ~ 8132854 (+) | True | G90955 |
| TU114568 | other | downstream | 1171247 | 14036876 ~ 14039063 (+) | False | AMCG00017620 |
| TU114814 | other | downstream | 2211696 | 15077325 ~ 15084278 (+) | True | G92046 |
| TU114828 | other | downstream | 2246981 | 15112610 ~ 15116031 (+) | False | AMCG00017650 |
| TU114906 | other | downstream | 3001402 | 15867031 ~ 15867634 (+) | True | G92123 |
| TU114914 | other | downstream | 3269396 | 16135025 ~ 16135316 (+) | True | G92130 |
