RNA id: AMCG00019347


Basic Information

Item Value
RNA id AMCG00019347
length 784
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00019347
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15520426 ~ 15529911 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGGAATGGCGGTCAACGTTTATTCTACCTCAATAACCCAGGAGACCATGAGCAGACATGACATCACAGCCTGGGTTAATGACATCCTCAGTTTAAACTACACAAAAGTTGAACAGCTCTCTTCAGGCGCGGCTTATTGTCAGTTCATGGACATGCTGTTCCCCGGCTGCATCAGTTTGAAGAAAGTAAAATTCCAGGCCAAGCTGGAGCATGAATACATTCACAACTTTAAGCTGCTGCAGGCCTCCTTTAAAAGGATGAATGTTGATAAGATTATTCCAGTGGAGAAATTGGTGAAAGGCCGATTCCAGGATAATCTTGATTTCATCCAGTGGTTCAAGAAATTCTTCGATGCCAATTATGATGGCAAAGAGTATGATCCCCTGCAGGCTCGGCAAGGGCAAGATGCCATTCCTCCACCCGACCCCGGCGAACAGATCTTCAACCTGCCTAAGAAGTCCCACCATGCAAACTCCCCCACAGCAGGTGCTACCAGGGCAAGTCCAGCTACTAAACCTTCAACACCATCATCCCGACCCTCGTCTGCTAAAAAAGTACCATTAACGACTACTCCTGCCAAGGGAGAAAAAGAGCTGGAAGCGCAGGTCACACAGCTAAATGACCAGgtgaattcattaaaaagtgcacTGGAAGGCGTGGAGAAGGAGCGGGATTTCTACTTTGGGAAGCTGCGGGACATCGAGCTGCTGTGCCAGGACCAGGGTCAGGACAGCGCTCAGTTTGTGGAGCGGCTAATGGAAGTCCTATATGCCACAGAGGAG

Function

GO: NA

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41557 lncRNA upstream 1028220 14491892 ~ 14492206 (+) True G33161
TU41546 lncRNA upstream 1234410 14285565 ~ 14286016 (+) True G33153
TU41531 lncRNA upstream 1359723 14152802 ~ 14160703 (+) True G33141
TU41465 lncRNA upstream 1882255 13633702 ~ 13638171 (+) True G33093
TU41445 lncRNA upstream 2208684 13311414 ~ 13311742 (+) True G33075
TU41764 lncRNA downstream 24908 15554819 ~ 15626955 (+) True AMCG00019345
TU41845 lncRNA downstream 398658 15928569 ~ 15931201 (+) True G33392
TU41859 lncRNA downstream 472885 16002796 ~ 16003201 (+) True G33404
TU41864 lncRNA downstream 571047 16100958 ~ 16101159 (+) True G33408
TU41880 lncRNA downstream 836203 16366114 ~ 16366342 (+) True G33422
AMCG00019342 mRNA upstream 40690 15436315 ~ 15479736 (+) True AMCG00019342
AMCG00019336 mRNA upstream 265029 15240522 ~ 15255397 (+) True AMCG00019336
AMCG00019337 mRNA upstream 291650 15219221 ~ 15228776 (+) True AMCG00019337
AMCG00019323 mRNA upstream 575199 14938940 ~ 14945227 (+) True AMCG00019323
AMCG00019324 mRNA upstream 592455 14914025 ~ 14927971 (+) True AMCG00019324
AMCG00019344 mRNA downstream 36744 15566655 ~ 15581014 (+) True AMCG00019344
AMCG00019345 mRNA downstream 75956 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019346 mRNA downstream 151993 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019350 mRNA downstream 163131 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019353 mRNA downstream 399964 15929875 ~ 16130440 (+) True AMCG00019353
TU41707 other upstream 350585 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 1033720 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5110929 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 5891764 9369898 ~ 9628662 (+) True G32293
TU40432 other upstream 6171607 9329479 ~ 9348819 (+) True AMCG00019215
TU41862 other downstream 514031 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 5077563 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 5077563 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 5077563 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 7085712 22615623 ~ 22625205 (+) False AMCG00019475

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046642 False 1366 mRNA 0.53 7 NC_007135.7 35681480 ~ 35699595 (-)