RNA id: AMCG00019346


Basic Information

Item Value
RNA id AMCG00019346
length 3058
RNA type mRNA
GC content 0.52
exon number 17
gene id AMCG00019346
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15681904 ~ 15688849 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgctttaaataagttacaacaaaactgtaattttaattcaaGCCCCAGTTCCCCTCAagacaaataatacaaacttcGCCCTGAGAGGCGTCTTGCTATTGGTCTGAAGTTGGCGCGAACAGAACCCGTGGAGCTGTTTCGCGCGAATTGTCCATCCGGAGTTTAAGCAGAAGCAGGCGAAACTGATAAGTGTTGTAACATGTCGTCACCGGCGTCAACCCCGAGTCGTCGTGGCAAGCGCGGCAGAGGCAGCAATCCTCCTACTCCTCGCAGCGATGTTCCTACGTCCCCCCCATCTCAGCGCCGGAGGACTGATGACACCTCCACAGGTGACCTGCAGCCCATGCCCACGTCCCCTGCCACCGACGTGCGCAGCCCTGCTGTCCAGGACACCTCCCTGTTCTCCAGTCCTGCACGCTCCCGGCACTCGGCGCCTCCAAGTGAGATTGACATGAGTTCCCCTCTGACGTACGGCACCCCCAGCTCCAGGGTGGAGGGCACGCCTCGCAGTGGAGTGCGGGGGACCCCTGCCAGGCAGCGTCCCGATCTGGGCTCTGTAAGGAAGGGCCGTCAGGTGGATCTGCATTCAGAACCACCCGCGGGGGAGGAAGCGGTGGCCAGTGAGCAGTCTGTAGGACAGAAGCTGGTGATCTGGGGGACTGATGTCAATGTGGGCACGTGCAAGGAGAAGTTTCAGCGTTTCCTTCAGCGCTTTATCGATCCTACTTCCAGAGAAGATGAAAATGCGGGTTTGGATCTGAATGAGCCCATTTATATGCAGAAACTGGAAGAGatcAATGTTGTTGGTGAACCTGTGCTGAATGTGAACTGTGGCCACCTGCAGTCCTTCGATGCTGATTTGTACAGGCAGCTGGTCTGCTATCCACAGGAAGTTATTCCCACTTTTGACATGGCTGTCAATGAGATATTCTTTGAGCGCTACCCAGATTCAATCTTGGAGCACCAGattcaggtgcggccctacaaTGCTCTGAAAACCAAGAACATGAGGAGCCTTAATCCTGAGGATATCGACCAGCTCATCACTATCAGTGGCATGGTGATCCGCACCTCTCAGCTGATTCCAGAGATGCAGGAGGCGTTTTTCAGGTGCCAGGTGTGTGCCTTCACTGCCCGGGTGGAGGTGGACCGCGGGCGCATCGCTGAACCAGCCGTGTGCCGCAACTGCAACACCACGCACAGCATGGCTCTGATCCACAACCGCTCGATGTTCTCTGACAAGCAGATGatCAAAATTCAGGAGTCTCCTGAAGACATGCCCGCAGGACAGACGCCTCACACCTCTGTCCTGTATGCTCACAATGACCTTGTGGATAAAGTGCAGCCTGGAGACAGAGTTAACATCACTGGCATTTACAGAGCAGTTCCCATGCGAGAGAACCCCCGTCAAAGCAACGTGAAGTCCGTGTACAAGACTCACATCGATGCCATCCACTTCCGAAAGACCGACGAGAAGCGGCTGCATGGGCTGGATGAGGAGACGGACCAGAAGCTCTTCACCGAGGAGCGGGTGCAGGTGCTGAAGGAGCTGGCTGCCAAGCCCGACATCTACGAGCGGCTCTCCTCTGCTCTGGCTCCGAGCATTTACGAACACGAGGATATCAAAAAAGGGATCCTTCTCCAGTTGTTTGGAGGTACTCGTAAGGACTTCAGCCACACTGGGCGCGGCAACTTCCGTGCCGAGGTCAACATCCTCCTGTGTGGAGATCCCGGCACGAGCAAATCTCAGCTGCTCCAGTACGTCTTCAACCTGGTGCCCCGGGGCCAGTACACCTCTGGCAAGGGCTCCAGCGCTGTGGGGCTCACTGCGTACATTATGAAGGACCCTGAGACACGGCAGCTGGTGCTGCAGACTGGCGCCCTGGTGCTGAGCGACAATGGCATTTGCTGCATTGATGAGTTTGACAAGATGAGTGACAGCACCCGGTCCGTGTTGCACGAAGTCATGGAGCAGCAGACTCTGTCAATCGCCAAGGCTGGAATTATCTGTCAGCTGAACGCCCGCACATCAATCCTGGCTGCAGCCAATCCCGTCGAGTCTCAGTGGAACCCCAAAAAGACGACTATTGAGAACATCCAGCTTCCACACACACTGTTATCAAGATTTGATCTCATCTTTCTGATGCTCGATCCCCAAGATGATGCTTATGACCGCCGCCTTGCACACCACTTGGTAGCGCTGTACTACCAGAGTGAGGAACAGATTGAGGAAGAGTTTCTCGATATGGCCGTGCTTAAAGACTACATCGCATATGCCCGCACATACATCGCACCCAGGCTCAATGAAGAAGCCAGCCAGGCCCTCATCGAAgcCTATGTGGACATGAGGAAGATTGGCAGTGGCAGAGGTATGGTCTCGGCCTACCCTCGTCAGCTGGAGTCCTTGATCAGACTGGCAGAAGCCCACGCGAAGGTGCGCTTCTCTGATAAAGTGGAAACCATTGATGTGGAGGAAGCCAAGCGGCTCCACCGTGAAGCTCTGAAGCAGTCAGCCACTGACCCCAGGACTGGCTTTGTGGACATCTCTATTCTGACTACAGGAATGAGTGCAACAGCCCGTAAGCGCAAGGAGGAATTAGCCCAAGTCCTGAAAAAACTAATCCAGGCAAAGGGCAAGACCCCGACCATGAAGTACCAACAGCTGTTTGATGATCTCCGTGGGCAGTCTGATGCTGCAATAACAAAGGACATGTTTGATGAAGCCCTGCGAGCTCTGACTGATGAAGATTATTTGACGGTTACTGGAAAGACAGTGCGATTGTTGTAAACTTTTTCTGTGTAGCAGTAGTGCTTactgctttttccttttttttttctaatgtgtgTTATCACATTTCACAGATGTTATGTTGGAATTTATTAACAATTTGAGAAATATTCTCTTTTTGATATTGTGCTTTGCAAAGGTTGTCCGTATCTAGTAAAGCagattcttaaaaaatgtaaataaatacatttttgtatttcacttgGAAATGTGTGGGAAAGTAGGGTTAAAGATGTCGgcttgcaataaaataattcacttATTTTCA

Function

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02212 MCM4, CDC54; DNA replication licensing factor MCM4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41764 lncRNA upstream 54949 15554819 ~ 15626955 (+) True AMCG00019345
TU41737 lncRNA upstream 148708 15484078 ~ 15533196 (+) True G33307
TU41557 lncRNA upstream 1189698 14491892 ~ 14492206 (+) True G33161
TU41546 lncRNA upstream 1395888 14285565 ~ 14286016 (+) True G33153
TU41531 lncRNA upstream 1521201 14152802 ~ 14160703 (+) True G33141
TU41845 lncRNA downstream 239720 15928569 ~ 15931201 (+) True G33392
TU41859 lncRNA downstream 313947 16002796 ~ 16003201 (+) True G33404
TU41864 lncRNA downstream 412109 16100958 ~ 16101159 (+) True G33408
TU41880 lncRNA downstream 677265 16366114 ~ 16366342 (+) True G33422
TU41906 lncRNA downstream 800022 16488871 ~ 16491053 (+) True G33444
AMCG00019345 mRNA upstream 56009 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019344 mRNA upstream 100890 15566655 ~ 15581014 (+) True AMCG00019344
AMCG00019347 mRNA upstream 151993 15520426 ~ 15529911 (+) True AMCG00019347
AMCG00019342 mRNA upstream 202168 15436315 ~ 15479736 (+) True AMCG00019342
AMCG00019336 mRNA upstream 426507 15240522 ~ 15255397 (+) True AMCG00019336
AMCG00019350 mRNA downstream 4193 15693042 ~ 15705080 (+) True AMCG00019350
AMCG00019353 mRNA downstream 241026 15929875 ~ 16130440 (+) True AMCG00019353
AMCG00019354 mRNA downstream 551533 16240382 ~ 16266099 (+) True AMCG00019354
AMCG00019365 mRNA downstream 804618 16493467 ~ 16856282 (+) True AMCG00019365
AMCG00019361 mRNA downstream 1355247 17044096 ~ 17050175 (+) True AMCG00019361
TU41707 other upstream 512063 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 1195198 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5272407 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 6053242 9369898 ~ 9628662 (+) True G32293
TU40432 other upstream 6333085 9329479 ~ 9348819 (+) True AMCG00019215
TU41862 other downstream 355093 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 4918625 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 4918625 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 4918625 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 6926774 22615623 ~ 22625205 (+) False AMCG00019475

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046640 True 3015 mRNA 0.52 17 NC_007135.7 35536664 ~ 35561672 (-)
grasscarp (Ctenopharyngodon idella) CI01000082_04610319_04618566.mRNA True 2395 mRNA 0.53 15 CI01000082 4610200 ~ 4618566 (-)