RNA id: TCONS_00046640


Basic Information

Item Value
RNA id TCONS_00046640
length 3015
RNA type mRNA
GC content 0.52
exon number 17
gene id XLOC_023606
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 35536664 ~ 35561672 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCACCGTTCACAGAAGAAGGGAAGAAGTGCGCACGTTTTGAGTCAAGATGTCTTCACCATCATCCCAGAGCCGTAAGAGAGACCCTCCGACCCcgGCGAGCGAGGATCCTCTGTCTCCTCCATCCCAGCGCTCCAGAGCTCATGATACCTCCACTGAGCTGCAGCCAATGCCCACCTCTCCGGCTCAGGATGCATCGCTGTTCTCCAGCCCCATGGCCCCGCGCTCCGTCTTGCAGAGTGAGATTGATGCCAGTTCTCCTCTGATGTACGGGACGCCCAGCTCCAGGGTGGAAGGAACGCCCCGCAGCGGCATCCGCGGGACACCGGCGCGCCAGCGGGCTGACCTGGGATCTGTGCGGAAAGCCCCGCAGGTCGACATGCACTCTGAGCCGGCCTCTGGAGACGCAGCAGTGGCCGGAGATCAGGGTGCAGGACAGAGGCTCGTGATCTGGGGGACTGATGTCAATGTGGGAACCTGCAAGGAGAAGTTTCAGCGTTTCCTTCAGCAGTTCACAGACCCCGACTCGAGAGAAGAGGAGAACGCTGGTCTGGATCTCAATGAACCGCTTTATATGCAGAAACTGGATGAGatcaGTGTTGTTGGAGAGCCGGTGTTGAATGTGAACTGCACTCATATTCAGACATTTGATGCTGATCTGTACCGCCAGCTCATCTGTTATCCACAGGAAGTCATCCCCACTTTCGACATGTCTGTCAATGAGCTCTTCTTCGATCGTTTTCCAGACTCTGTGTTGGAGCATCAGATTCAAGTGCGACCCTACAGCGCTATTAAAACCAGAAACATGCGCAACCTCAATCCTGAAGACATTGACCAGCTCATCACTATCAGCGGGATGGTGATCCGTACATCTCAGCTGATCCCGGAGATGCAGGAGGCTTTTTTCCGCTGTCAGGTTTGTGCGTTTAACACGCGTGTGGAGGTGGATCGCGGACGCATCGCTGAACCCGCCGTCTGCCGAAACTGCAACACCACACACAGCATGGCACTGGTGCACAACCGCTCCGTCTTCTCCGACAAACAAATGATAAAGCTGCAGGAGTCTCCGGAGGACATGCCTGCGGGTCAAACTCCTCACACCACAGTCGTCTACGCTCACAACGACCTGGTGGACAAAGTGCAGCCCGGAGACCGAGTCAACATCACCGGCATCTACAGAGCTGCCCCGATGCGTCTGAACCCACGGCAGAGCCAGGTGAAGTCTGTTTACAAGACCCACATTGACGCCATTCACTTCCGCAAGACTGACGAGAAGCGTCTGCATGGACTGGACGAGGACGGAGAGCAGAAACTCTTCACTAAAGAACGAGTCGCTCTGCTAAAAGAGCTAGCCGCTAAACCTGACGTCTATGAGCGCCTGTCCTCTGCTCTGGCTCCCAGCATCTACGAACACGAGGACATCAAGAAGGGCATCCTGTTGCAGTTATTTGGCGGGACGCGTAAGGACTTCACTCAGACGGGCCGAGGAAACTTCCGTGCTGAAGTCAACATCCTGCTGTGTGGTGATCCGGGCACCAGTAAATCCCAGCTGCTGCAGTACGTGTACAACCTGGTTCCTCGCGGTCAGTACACGTCCGGGAAAGGATCCAGCGCCGTTGGTCTCACAGCCTACGTGATGAAGGATCCTGAAACCCGACAGCTGGTCCTGCAGACCGGAGCGCTCGTGCTCAGCGATAATGGCATCTGCTGCATCGACGAGTTCGACAAGATGAGCGACAACACCAGATCTGTGCTGCACGAGGTCATGGAGCAGCAGACGCTCTCTATTGCTAAGGCTGGGATTATTTGTCAGCTTAATGCTCGGACCTCCATCCTCGCAGCAGCCAATCCGGTGGAGTCTCAGTGGAACCCCAAAAAGACAACGATAGAGAACATTCAGCTGCCTCACACACTGCTGTCCAGGTTTGATTTGATCTTCCTAATGCTGGACCCTCAGGACGAGGCGTATGACAGGCGTCTGGCGCACCACCTTGTCTCTCTGTATTATCAGAGTGAAGAGCAGATTGAAGAGGAGCATCTGGACATGGCTGTACTGAAAGACTACATCGCCTTCGCTCGCACAACTGTACATCCCAGACTGAGTGAAGAAGCCAGTCAGGCCCTTATTGAGGCCTATGTGGACATGCGCAAGATCGGCAGCGGTCGAGGGATGGTGTCTGCGTATCCCCGTCAGCTGGAGTCACTCATCAGGCTAGCTGAAGCTCATGCTAAAGTACGCTTCTCTGGAAAAGTGGAGACCATCGATGTGGAGGAAGCCAAGAGACTCCATCGAGAAGCCCTGAAACAGTCCGCAACTGATCCCAGGACAGGATTTGTGGATATTTCCATCCTCACCACAGGAATGAGCGCTACAGCACGCAAGCGTAAGGAGGAAGTGGCTCAAGCACTGAAGAAGCTCATCCAATCAAAGGGCAAAACACCAGCAATGAAGTACCAACAGCTGTTCGATGATCTCCGTGGCCAGTCGGAAGCGGCCATCACTAAGGACATGTTTGATGAAGCCCTCAGACTTCTGGCTGATGAAGATTATCTGACGGTCACAGGAAAAACTGTCCGGCTTCTCTAAATCTTTGACTCTGCTGCTTCCTCTTTCGCTGCTTGCATTTCCTGTTGTGCTTTTTCTATCGAGCAAATGTTGTTAATAGTGTGTGGAGCCTTTCTGGTTACAATAAATGAGTTTTGTTATTCTTACAAAGATTTTGTATATAGTGTGTGGTTTAGTTGTTTTGCAAATAGGTAATATGCAAAGCATGTGCTCTCTGACCCAAAGCCATTGAGGTGTTAGTGAAAACATTAAAGAACGCTTTATATCTGGTGCAGAAACAAGATGAAGATGAAACAATTCACAGTGTGTATAATGACATGAATGGATTAAAAACACTGCGTATTATCCTGCAGGAGTTTGAACATTGACATAAACGATGTGGTTAATATAAATGGATTCTTTTTACAATGGCAAAGTAATTGAAGACTGAAATAAACAGCTGGTTGTTct

Function

GO:

id name namespace
GO:1902975 mitotic DNA replication initiation biological_process
GO:0001878 response to yeast biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006260 DNA replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0006268 DNA unwinding involved in DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0006271 DNA strand elongation involved in DNA replication biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030131-9544 Enables chromatin binding activity. Acts upstream of or within response to yeast. Predicted to be located in chromosome. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in digestive system; nervous system; otic vesicle; pectoral fin; and proliferative region. Human ortholog(s) of this gene implicated in immunodeficiency 54. Orthologous to human MCM4 (minichromosome maintenance complex component 4).

Ensembl:

ensembl_id ENSDART00000058564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046879 lncRNA downstream 91507 35433816 ~ 35445157 (-) True XLOC_023604
TCONS_00047234 lncRNA downstream 308976 35225484 ~ 35227688 (-) True XLOC_023602
TCONS_00046878 lncRNA downstream 587628 34908852 ~ 34949036 (-) True XLOC_023601
TCONS_00047233 lncRNA downstream 587967 34883901 ~ 34948697 (-) False XLOC_023601
TCONS_00047232 lncRNA downstream 673063 34863040 ~ 34863601 (-) True XLOC_023600
TCONS_00047235 lncRNA upstream 147895 35709567 ~ 35724376 (-) True XLOC_023608
TCONS_00047236 lncRNA upstream 317089 35878761 ~ 35881758 (-) False XLOC_023610
TCONS_00046647 lncRNA upstream 317089 35878761 ~ 35922389 (-) True XLOC_023610
TCONS_00047237 lncRNA upstream 413147 35974819 ~ 35996250 (-) True XLOC_023611
TCONS_00047240 lncRNA upstream 436767 35998439 ~ 36014730 (-) False XLOC_023612
TCONS_00046639 mRNA downstream 2391 35522301 ~ 35534273 (-) True XLOC_023605
TCONS_00046638 mRNA downstream 254096 35232716 ~ 35282568 (-) False XLOC_023603
TCONS_00046637 mRNA downstream 254096 35232716 ~ 35282568 (-) True XLOC_023603
TCONS_00046636 mRNA downstream 266673 35232716 ~ 35269991 (-) False XLOC_023603
TCONS_00046635 mRNA downstream 855708 34488316 ~ 34680956 (-) True XLOC_023599
TCONS_00046641 mRNA upstream 118125 35679797 ~ 35699444 (-) False XLOC_023607
TCONS_00046642 mRNA upstream 119808 35681480 ~ 35699595 (-) False XLOC_023607
TCONS_00046643 mRNA upstream 122242 35683914 ~ 35707552 (-) True XLOC_023607
TCONS_00046644 mRNA upstream 151987 35713659 ~ 35767501 (-) False XLOC_023609
TCONS_00046645 mRNA upstream 152048 35713720 ~ 35767501 (-) False XLOC_023609
TCONS_00046633 other downstream 1421150 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046605 other downstream 3340252 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046593 other downstream 3750087 31786463 ~ 31786577 (-) True XLOC_023567
TCONS_00046592 other downstream 3896237 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046586 other downstream 4204751 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046660 other upstream 733639 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046677 other upstream 1799517 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046678 other upstream 1804759 37366431 ~ 37404466 (-) True XLOC_023644
TCONS_00046699 other upstream 2537224 38098896 ~ 38099675 (-) True XLOC_023660
TCONS_00046706 other upstream 2616289 38177961 ~ 38178027 (-) True XLOC_023665

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000082_04610319_04618566.mRNA True 2395 mRNA 0.53 15 CI01000082 4610200 ~ 4618566 (-)
bowfin (Amia calva) AMCG00019346 True 3058 mRNA 0.52 17 CM030124.1 15681904 ~ 15688849 (+)