RNA id: TCONS_00046879


Basic Information

Item Value
RNA id TCONS_00046879
length 273
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_023604
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 35433816 ~ 35445157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGGTCAGAGTGAGAGATGAGATGAGTGTGAGGAGCGTGTTTTAACTTGTGgtgacgttgcggaagtttccctccatcctccccatcaccaccaccaccaggttggcctCGTCTCCACTCGGGGTTTGCTTCGCCCTGCCCTtatcttcaggcaggatctgccagctcatccagagttctgcactatagacggggcttacgccaaagaactttatgaaaggaccgtaacgaactctcattcatgcaaacaattcacaataaatgttcaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047234 lncRNA downstream 206128 35225484 ~ 35227688 (-) True XLOC_023602
TCONS_00046878 lncRNA downstream 484780 34908852 ~ 34949036 (-) True XLOC_023601
TCONS_00047233 lncRNA downstream 485119 34883901 ~ 34948697 (-) False XLOC_023601
TCONS_00047232 lncRNA downstream 570215 34863040 ~ 34863601 (-) True XLOC_023600
TCONS_00047231 lncRNA downstream 1364058 34057279 ~ 34069758 (-) True XLOC_023596
TCONS_00047235 lncRNA upstream 264410 35709567 ~ 35724376 (-) True XLOC_023608
TCONS_00047236 lncRNA upstream 433604 35878761 ~ 35881758 (-) False XLOC_023610
TCONS_00046647 lncRNA upstream 433604 35878761 ~ 35922389 (-) True XLOC_023610
TCONS_00047237 lncRNA upstream 529662 35974819 ~ 35996250 (-) True XLOC_023611
TCONS_00047240 lncRNA upstream 553282 35998439 ~ 36014730 (-) False XLOC_023612
TCONS_00046638 mRNA downstream 151248 35232716 ~ 35282568 (-) False XLOC_023603
TCONS_00046637 mRNA downstream 151248 35232716 ~ 35282568 (-) True XLOC_023603
TCONS_00046636 mRNA downstream 163825 35232716 ~ 35269991 (-) False XLOC_023603
TCONS_00046635 mRNA downstream 752860 34488316 ~ 34680956 (-) True XLOC_023599
TCONS_00046634 mRNA downstream 1098551 34139146 ~ 34335265 (-) True XLOC_023598
TCONS_00046639 mRNA upstream 77144 35522301 ~ 35534273 (-) True XLOC_023605
TCONS_00046640 mRNA upstream 91507 35536664 ~ 35561672 (-) True XLOC_023606
TCONS_00046641 mRNA upstream 234640 35679797 ~ 35699444 (-) False XLOC_023607
TCONS_00046642 mRNA upstream 236323 35681480 ~ 35699595 (-) False XLOC_023607
TCONS_00046643 mRNA upstream 238757 35683914 ~ 35707552 (-) True XLOC_023607
TCONS_00046633 other downstream 1318302 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046605 other downstream 3237404 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046593 other downstream 3647239 31786463 ~ 31786577 (-) True XLOC_023567
TCONS_00046592 other downstream 3793389 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046586 other downstream 4101903 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046660 other upstream 850154 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046677 other upstream 1916032 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046678 other upstream 1921274 37366431 ~ 37404466 (-) True XLOC_023644
TCONS_00046699 other upstream 2653739 38098896 ~ 38099675 (-) True XLOC_023660
TCONS_00046706 other upstream 2732804 38177961 ~ 38178027 (-) True XLOC_023665

Expression Profile

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