RNA id: AMCG00019342


Basic Information

Item Value
RNA id AMCG00019342
length 2055
RNA type mRNA
GC content 0.52
exon number 18
gene id AMCG00019342
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15436315 ~ 15479736 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGAAGATCGTGGGAGACGAGCTAATACCATGGCCGAGAGAAGACAGCTGTTTGCAGAAATGCGGGCTCAAGATTTGGATCGCATTCGATTATCAACCTACAGAACAGCATGCAAGCTCAGATTTGTTCAAAAGAAATGCAACTtacatcTGGTGGACATTTGGAATGTTATAGAAGCCTTCAGGGAAAATGGGCTGAACACAATGGATCCCAACACAGAGTTCACTGTGGCTCGCCTGGAAGCAATACTGTCCACCATTTTCTACCAGCTCAACAAGAGGATGCCGACCACCCACCAGATCAACGTGGAGCAATCCATCAGCCTGCTGCTCAACTTCCTGCTCGCTGCATATGACCCggAAGGCCATGGCAAAATATCAGTCTTTGTTGTGAAGATGGCATTGGCAACGATTTGTGGAGGAAAGATTTTAGACAAATTAAGGTatattttttcacagatttccgACACTAGCGGTATTATGATTTATTCAAAGTTTGACCTGTTCTTGAGGGAGGTGCTGAAGCTGCCGACCACAGTGTTTGAGGGTCCTTCCTTCGGATACACGGAGCAGGCCGCTCGCTCTTGCTTTGCCCAGCAGAAAAAGGTCACACTCAACACTTTCCTGGACACCCTCATGTCTGACCCACCTCCTCAGTGTCTGGTCTGGTTACCACTAATGCACCGCCTGGCAAATGTAGAAAATGTCTTTCACCCTGTTGAGTGTTCGTACTGCCATAGTGAGAGTATGATGGGGTTTCGCTATCGCTGCCAGCAGTGTCATAATTACCAGCTTTGTCAGGACTGTTTCTGGAGGGGACATGCGAGTGGTTCCCATAGCAACCAGCACCAAATGAAGGAATATACATCATGGAAATCTCCCGCTAAGAAGTTAACTAATGCACTTAGCAAGTCCCTAAGCTGTGCTTCCAGCCGCGAGCCTTTGCACCCAATGTTCCCTGACCAGCCCGAAAAACCCCTAAACCTGGCTCACATTGTGCCACCGAGACCCGTAAACAGCATGAATGACTCGATGTTCTCTCACTCTGTTCCCACCTCAGGAAGCCCTTTCACAAGTAAAAGGTTAAACTACAGCCTAGAGGTTGCCGATAGACTGGCTGATGAACATGTGCTCATCGGGCTGTATGTCAATCTGCTCCACAGCAACCCCACACGCATGCTGGAGAGTACAAGCCGTCTGGATGAGGAACACCGGCTCATTGCACGCTACGCTGCAAGGCTCGCAGCAGATGCGGCGTCAACGCAACAAGCTCAACAGCAAAGGGCTGCTTCAGAAATTGCCTTCACCCTTgatgcaaacaaacagcaacgGCAGCTCATTGCAgaactagaaaacaaaaacagGGAGATCCTGCAGGAAATTCAGCGGCTGCGTCTGGAGCACGAGCAGGCCTCTCAGCCCACCCCGGAAAAGGCCCAGCAGAACCCGACCCTCCTGGCCGAGCTGCGGCTTCTCAGGCAACGCaaggatgagctggagcagaggATGTCCGCGCTACAGGAGAGCCGCAGGGAACTCATGGTGCAGCTTGAGGGACTCATGAAACTGCTCAAGACCCAGGGGGCAGGCTCCCCTCGTTCATCCCCCAGCCATACGATCAGCCGGCCAATCCCAATGCCTATCCGCTCTGCGTCAGCCTGCTCCACTCCAACCCACACACCTCAGGATTCGCTCACCGGCGTTGGAGGGGACGTGCAGGAAGCCTTTGCTCAGAGCTCCAGGAGGAATTTAAGAAATGACCTGCTGGTGGCTGCTGATTCCATCACAAACACTATGTCATCACTTGTCAAGGAGCTCAACTCAGAAGATGGCAGTGGGGGTGAGGATGAGGACACACTGCAGAACGGACTGTACAGGGAAGCTGGCAGCGAAACGGAGAGCAACGTGGACTCAGACTTCGGGCGTGCCCACTTTGATGATCTGGTCCCCTCACCCACCTCAGAGAAGGCCTTCCTTGCACAGATTCATGCCAGAAAACCAGGGTATCACCACAGCGCCACGGCCTCAGGCACCCTCCGCAGTGACATGTAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41557 lncRNA upstream 944109 14491892 ~ 14492206 (+) True G33161
TU41546 lncRNA upstream 1150299 14285565 ~ 14286016 (+) True G33153
TU41531 lncRNA upstream 1275612 14152802 ~ 14160703 (+) True G33141
TU41465 lncRNA upstream 1798144 13633702 ~ 13638171 (+) True G33093
TU41445 lncRNA upstream 2124573 13311414 ~ 13311742 (+) True G33075
TU41737 lncRNA downstream 4342 15484078 ~ 15533196 (+) True G33307
TU41764 lncRNA downstream 75083 15554819 ~ 15626955 (+) True AMCG00019345
TU41845 lncRNA downstream 448833 15928569 ~ 15931201 (+) True G33392
TU41859 lncRNA downstream 523060 16002796 ~ 16003201 (+) True G33404
TU41864 lncRNA downstream 621222 16100958 ~ 16101159 (+) True G33408
AMCG00019336 mRNA upstream 180918 15240522 ~ 15255397 (+) True AMCG00019336
AMCG00019337 mRNA upstream 207539 15219221 ~ 15228776 (+) True AMCG00019337
AMCG00019323 mRNA upstream 491088 14938940 ~ 14945227 (+) True AMCG00019323
AMCG00019324 mRNA upstream 508344 14914025 ~ 14927971 (+) True AMCG00019324
AMCG00019331 mRNA upstream 528837 14903342 ~ 14907478 (+) True AMCG00019331
AMCG00019347 mRNA downstream 40690 15520426 ~ 15529911 (+) True AMCG00019347
AMCG00019344 mRNA downstream 86919 15566655 ~ 15581014 (+) True AMCG00019344
AMCG00019345 mRNA downstream 126131 15605867 ~ 15625895 (+) False AMCG00019345
AMCG00019346 mRNA downstream 202168 15681904 ~ 15688849 (+) True AMCG00019346
AMCG00019350 mRNA downstream 213306 15693042 ~ 15705080 (+) True AMCG00019350
TU41707 other upstream 266474 15164348 ~ 15169841 (+) True G33283
TU41554 other upstream 949609 14439253 ~ 14486706 (+) True G33159
TU40734 other upstream 5026818 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 5807653 9369898 ~ 9628662 (+) True G32293
TU40432 other upstream 6087496 9329479 ~ 9348819 (+) True AMCG00019215
TU41862 other downstream 564206 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 5127738 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 5127738 20607474 ~ 20610889 (+) True G34170
TU42785 other downstream 5127738 20607474 ~ 20610889 (+) False G34170
TU43058 other downstream 7135887 22615623 ~ 22625205 (+) False AMCG00019475

Expression Profile