RNA id: AMCG00020066


Basic Information

Item Value
RNA id AMCG00020066
length 1200
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00020066
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8812785 ~ 8828109 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCGGAGTTTACGGAGACTGGTGCATCTGGTGCTGTTTTGCCCCCTGTCCAAAGGGTTGCAGAGCCGTCTGCCTGCGATCAAGGTGAAGTACCTGTTTCTGGCTTGGCTGGGTATTTTCGTAGGGAGCTGGGCTGTCTACATGCATTATTCATCCTACTCTGAGCTGTGTCGTGGACATGTCTGCCAAATGATAATATGTGATCACTACAGAAGAGGCATCATCTCTGGATCTTCCTGTAAAGCTCTTTGTGAAGAAAATACGTTGGTGTTACAGCACTGCCTGTCCTCAACTCCCTCACACCAGGTTTATAGTGGATCTTGGAAGCATAAGCCGGTGATAATCAAGTGTGGGATTGAGGAGACCCTGCGAGGGGATGGCAGCCCAGACTCGGCGCCCAGGAGGGAGATGACGCTCTTTGACAAACCCACCAGAGGGACCTCCATGGATGAATTCCGAGAGATGCTTCACAGCTTCCTGAGGTCCAATCTTGGTGAGCAGCCGTCTCTGGGGAGCCTTGTGGGCCGGGTGATCTCTCTGTCAGATGTTAACCAGGATGGGAAGGTGTCCCTGGCTGAGGCCAAGTCTGTGTGGGCGCTGCTGCAGGTCAACGAGTTCCTGCTCATGGTGGCGCTGCAGGAGAAGGAACACACCCCTAAATTGCTGGGCTTCTGCGGCGATCTGTATGTGACCGAGCAGGTTGCCCACAGCTCCCTCTATAGGCTGGAGGTCCCTCGCTACCTGCAGCCGCTGTTTGTGGAGGAGGTCTTCCATGGCTCCTACGGCAGCTTCTACATGTGTGATGCCAGCCCCCGGCACGTGGGCTACAACAGCAAGTATGACTGCAAGATGGCCGACCTGCGCAGCGTGGCCTCCGAGATGGCTGTGCGGGGCTACCTGAAGGGCCGCCACTGCGAGCACAACAGCGACTGCACCTACGGCCAGGACTGCACGGCCACCTGCGACAAGCTGGTCAAGCAGTGCAACACCGAGGTGGTGCAGCCCAACCTGGCCAAGGTTTGCCGACTCCTGCAAGACTACCTACTGTTCGGTGCCCCGCCTGAACTCCGTGAGGACTTGCAGAAGCAGCTACGAACTTGTGTCACCCTCAGTGGGCTGGCCAGTCAGATGGAGGTGCACCACTCCCTGGTTCTCAACAACCTGAAGACACTCCTGTGGAAGAAGATCTCCAACACT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75971 lncRNA downstream 2892 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 13618 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 16470 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 765544 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 958412 7853001 ~ 7854373 (-) True G60610
TU76021 lncRNA upstream 152663 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 330317 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 441950 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 1100367 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 1258303 10085913 ~ 10091086 (-) True G61027
AMCG00020061 mRNA downstream 486410 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020062 mRNA downstream 506833 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020058 mRNA downstream 677834 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 696749 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020055 mRNA downstream 740855 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020067 mRNA upstream 27206 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020081 mRNA upstream 136951 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 194213 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020077 mRNA upstream 250130 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020082 mRNA upstream 287863 9115473 ~ 9127068 (-) True AMCG00020082
TU75693 other downstream 1250193 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2341351 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 2346199 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 2346199 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 2359187 6450622 ~ 6453598 (-) False AMCG00020017
TU75987 other upstream 11601 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 1927858 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2868081 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3656759 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3656759 12484369 ~ 12496740 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU163773 True 6556 lncRNA 0.39 2 NC_035910.1 12062305 ~ 12069076 (+)