RNA id: TU75492


Basic Information

Item Value
RNA id TU75492
length 892
RNA type TUCP
GC content 0.49
exon number 3
gene id G60348
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6463548 ~ 6466586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTCatgtcactttttttatttcatataaattatGTACACTCATAAATGGGCCATGAAACGGGACTTTTTtccgatttttttttattcaatgcaaGAGAACAGCCTTATGCCTTGACGGCGAATTTGCGGATGGGGTACAGGCGCTCCTTCCTCTGCAGTTTCTTGGTCTTCAGGCTCTCTTCGTGCTTGTTCAGCCGTCTGCGCATGGCACGAGTCTTCTTGGGCCTCAGATCCAAAGGCTTGTACTTCTTGCCCTGAACTTGTAGAACTTCCTCAGGTTCTCCTTCTGCGTCTGGTTAATGACAGTCAGAACTCTGGCGATGGACTTGCGAACAACACGGCTACAAAAGAAGGTAAGATCACTAACCTGTCCATTTCAAATTCATATCTATCCCCCAAAAAAGGaccacttaaataaataaataaaaataaatccacaactGAAGAGGTAAACCCAGGCCATTTCTAATATCGCCTCCCCTATGGTAGAATCTGCCATGTTCTCCAACCCCACCACCAGTGACAGTGGAAGCTCAAGGCAGACCGCTGAACTAGTGAGGTCTGCTCATTGATGTCCACGATGAGAACTTACATCTTGGAGAGTTTGGAAGCAGCTCCTCCGGTGACCTTGGCCACGCGGAGCTGGGACAGTTCCACCTTCAGGTCGTCCAGCTGCTTCAGCAGCTCTTCCTTCTTCTTGCCACGCAGATCTCGTGCCTTGATCTTTGCATTGTCAGTGCTGGCCGCCACAGGAAAGGGAATGCGCAGGTCACAGGCGAGCTCTACCGGGTTACGGGCGAAACCAACTGCCTTCACCGCACTGAGAGGGGGGTCGGACTGGTCCATCGGTAGGTGCGCTTTTAACGTGTTAAGCGAGCGTTGattaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75473 lncRNA downstream 18815 6443275 ~ 6444733 (-) True G60345
TU75437 lncRNA downstream 104609 6300656 ~ 6358939 (-) True G60317
TU75431 lncRNA downstream 187516 6274269 ~ 6276032 (-) True G60311
TU75387 lncRNA downstream 298801 6159577 ~ 6164747 (-) True AMCG00020002
TU75383 lncRNA downstream 308324 6154918 ~ 6155224 (-) True G60271
TU75501 lncRNA upstream 20723 6487309 ~ 6489377 (-) True G60356
TU75527 lncRNA upstream 212592 6679178 ~ 6695776 (-) True G60377
TU75537 lncRNA upstream 331323 6797909 ~ 6800750 (-) True G60387
TU75725 lncRNA upstream 1106011 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 1386415 7853001 ~ 7854373 (-) True G60610
AMCG00020017 mRNA downstream 2120 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020011 mRNA downstream 118856 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020013 mRNA downstream 130181 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020012 mRNA downstream 134918 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020005 mRNA downstream 263514 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020019 mRNA upstream 685 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020018 mRNA upstream 102469 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020024 mRNA upstream 402987 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020025 mRNA upstream 432298 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020026 mRNA upstream 519950 6986536 ~ 7008056 (-) True AMCG00020026
TU75483 other downstream 9950 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 1170875 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 1185257 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 1197623 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 1402271 5012444 ~ 5061277 (-) True AMCG00019976
TU75494 other upstream 1702 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 974217 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 2347673 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 2372625 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 4288882 10755468 ~ 10756419 (-) True G61170

Expression Profile