RNA id: TU75977


Basic Information

Item Value
RNA id TU75977
length 1273
RNA type TUCP
GC content 0.52
exon number 5
gene id AMCG00020066
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8812785 ~ 8828109 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACACAGCATTGCGAGAGCATTCACAGAAACTCATTTCCCGTTTGCTCCGTGGACGAAATATCTCCTATGAGAAGCAACGTAGCACTTTCTCACTTGACAGCTTGCAGCATTTTTGCATTCACCAGCATGAATGATTTGTAATTAGTTGTTTGCAAAACGCAGTGCGAGTTGATCGtgcattacatttctgtgtgtgtgtgtgttttatgcgTGGCAGTGCTACGAGAGGCAATGAGACCCTGCCTGCACACGATTTCCGTCACATCGTCTTGTGTATAGACCTTGCAAGACACATGCACGGCTTAGAGGAGATTTACCTTCACCTACGTGTGCATTTGAAACATCTTGGCGGAATCGGATGATGCTGAAGCGTGTCTTGCGTGGCCGCTGCAGCAGGATGTGTTACACCAGGAGGATACTGGAGCGACACTGATTTGACGACCATCCTCTGGATCTGCAGCAGCGGAGGACGCTTTATGTTTTCCGGACAGCCCAAGATGATGCGGAGTTTACGGAGACTGGTGCATCTGGTGCTGTTTTGCCCCCTGTCCAAAGGGTTGCAGAGCCGTCTGCCTGCGATCAAGGTGAAGTACCTGTTTCTGGCTTGGCTGGGTATTTTCGTAGGGAGCTGGGCTGTCTACATGCATTATTCATCCTACTCTGAGCTGTGTCGTGGACATGTCTGCCAAATGATAATATGTGATCACTACAGAAGAGGCATCATCTCTGGATCTTCCTGTAAAGCTCTTTGTGAAGAAAATACGTTGGTGTTACAGCACTGCCTGTCCTCAACTCCCTCACACCAGGTTTATAGTGGATCTTGGAAGCATAAGCCGGTGATAATCAAGTGTGGGATTGAGGAGACCCTGCGAGGGGATGGCAGCCCAGACTCGGCGCCCAGGAGGGAGATGACGCTCTTTGACAAACCCACCAGAGGGACCTCCATGGATGAATTCCGAGAGATGCTTCACAGCTTCCTGAGGTCCAATCTTGGTGAGCAGCCGTCTCTGGGGAGCCTTGTGGGCCGGGTGATCTCTCTGTCAGATGTTAACCAGGATGGGAAGGTGTCCCTGGCTGAGGCCAAGTCTGTGTGGGCGCTGCTGCAGGTCAACGAGTTCCTGCTCATGGTGGCGCTGCAGGAGAAGGAACACACCCCTAAATTGCTGGGCTTCTGCGGCGATCTGTATGTGACCGAGCAGGTTGCCCACAGCTCCCTCTATAGGCTGGAGGTCCCTCGCTACCTGCAGCCGCTGGTGCCCTCGGCCCTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75971 lncRNA downstream 4366 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 15092 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 17944 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 767018 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 959886 7853001 ~ 7854373 (-) True G60610
TU76021 lncRNA upstream 152164 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 329818 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 441451 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 1099868 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 1257804 10085913 ~ 10091086 (-) True G61027
AMCG00020061 mRNA downstream 487884 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020062 mRNA downstream 508307 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020058 mRNA downstream 679308 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 698223 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020055 mRNA downstream 742329 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020067 mRNA upstream 26707 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020081 mRNA upstream 136452 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 193714 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020077 mRNA upstream 249631 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020082 mRNA upstream 287364 9115473 ~ 9127068 (-) True AMCG00020082
TU75693 other downstream 1251667 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2342825 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 2347673 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 2347673 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 2360661 6450622 ~ 6453598 (-) False AMCG00020017
TU75987 other upstream 11102 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 1927359 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2867582 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3656260 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3656260 12484369 ~ 12496740 (-) False AMCG00020180

Expression Profile