RNA id: TU75693


Basic Information

Item Value
RNA id TU75693
length 338
RNA type TUCP
GC content 0.52
exon number 2
gene id G60516
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7440803 ~ 7562592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggatttaaaggatctgctgctaacgacttggtgccagataccacagcacaccctcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcggcaaaagggggacctacacaatattaggcaggtggtcacaatgttatggctgatcagtgta

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 640053 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 745027 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 951426 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 974217 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA downstream 974217 6463548 ~ 6466586 (-) True G60348
TU75725 lncRNA upstream 10005 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 290409 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 482017 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1231376 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1236372 8798964 ~ 8799167 (-) True G60725
AMCG00020035 mRNA downstream 55041 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020027 mRNA downstream 314180 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020026 mRNA downstream 432747 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020025 mRNA downstream 517330 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020024 mRNA downstream 543814 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020043 mRNA upstream 204333 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020051 mRNA upstream 229706 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020050 mRNA upstream 237330 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020054 mRNA upstream 319228 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020055 mRNA upstream 491227 8053819 ~ 8071930 (-) True AMCG00020055
TU75494 other downstream 969369 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 974217 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 974217 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 987205 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 2148130 5291590 ~ 5292673 (-) False AMCG00019992
TU75977 other upstream 1251667 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1276619 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3192876 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4133099 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4921777 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile