RNA id: AMCG00020123


Basic Information

Item Value
RNA id AMCG00020123
length 1375
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00020123
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10538282 ~ 10540365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAACGTCGCCCACGAATTACGTCACAGTGATGCGACCGGCTTCGACGGAGTCGGAGGTTAAAGATGTCATGACTGATCTGACTCATGTGTGTGTCATTCATGTTGCAGCGTGTGTTGCAACCTTTAACAAGGCTGTTTCGTGGTATCCTGTCATTCAGCATGAGACGTTGGGTAACCAGTATTATTAATCGCGTTTTACTGTATGAACCTCTTTCACTTAAAATGAGCACCGACGTGCCTCAAAACCATAAAATGCGCCAGAAAATGGTTGTCGGTCTGGGCAACCCTGGCATGAGCGGGACGCGGCACAGCGTTGGCATGGCGGCTCTGGCTGCCCTGGCTGGCAGGCTGGGGGTGGCAGAGCTCTGGCGGGGGGACAGGCAGGTGTCGGGGGAGGTGGTCCTGTCAGAGCTGGGGGAGACCCGACTGGTACTGCTCAGACCTAGACTCCTCATGAACATCAATGGGGTCAGTGTGGCCAAGGCTGcTGCCAAGTTTCACATACAGCCAGAAGATATTTACCTCCTACACGACGAGCTGGACAAGCCTCTTGGAAAAGTCTCTATGAAGCAGGGAGGCAGTGCTAGGGGTCACAATGGGGTGCGTTCTTGTGTAGAGTGTCTGAAAACTGACGTAATGCCACGGGTGAGGATTGGCATCAGCCGGCCTGCAGGGAAGGTTTCTGTGGAGCGCTATGTCCTGGGCAGGTTTACCAGAGAGGAGCAGGAAGTGCTGAGGGAGGTGCTGGAGCAGAGCGTGGAGCTGCTGCTCAGACACATCATAGACAGTGGAactgacacagcactgcagcacaCAAAAGTGCCACCAGGCGGCAGGGCTGCAGAGAAAACATGAGTTTGGACTGGACTGATGAAATGTATCAATTGTGCTACAGTTATGGCATGTGGACTCAAAAGCGGAATGAAGCAGCGCCACCAGCCATCCAGGAAAAGTAATGGTGCACCGGACAAGAGAGATTTTAAGATGGATTAGTGGTTTTGCTGTGATACCAGATTGAAGGTAGCAGAATAAGCATGTGGCAGCCATGCATTTAGGTATTTTAAAAGGATGATGTGCAGAAAGTCTTATGCTGATTAAAATGGACTGGGTGGCTTTGGATATGGTGctctattgaatatgtatttttataaagcCACATTTCAATTGTATACCTCTAcagtttgtaatttttgtacttttgtcaTATTTCCTcatctgtaaaaatacaaacctaTTTGTAAAGGGTGTGAACTTTTTCTGTGTGTACCTATAATCAGGTTAGAGTAGGAGCTATGTCAAGAATTGTGCTTTTaggtgtgtttttattctgttcctGTTTATAAATATCAAATGTGCAAATATTATACTGGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K01056 PTH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76445 lncRNA downstream 30645 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 332604 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 447196 10085913 ~ 10091086 (-) True G61027
TU76310 lncRNA downstream 609416 9927977 ~ 9928866 (-) True G60993
TU76105 lncRNA downstream 1235035 9269560 ~ 9303247 (-) True G60839
TU76499 lncRNA upstream 156253 10696618 ~ 10698099 (-) True G61136
TU76500 lncRNA upstream 157764 10698129 ~ 10700883 (-) True G61137
TU76576 lncRNA upstream 420771 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 421946 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 426815 10967180 ~ 10969599 (-) True G61203
AMCG00020117 mRNA downstream 276458 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020112 mRNA downstream 595206 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020107 mRNA downstream 647719 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020106 mRNA downstream 685736 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020100 mRNA downstream 739124 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020125 mRNA upstream 4420 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020124 mRNA upstream 90927 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020132 mRNA upstream 164610 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020133 mRNA upstream 233331 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020136 mRNA upstream 242999 10783364 ~ 10816925 (-) True AMCG00020136
TU75987 other downstream 1698337 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1710173 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2975690 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4066848 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 4071696 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 215103 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1155326 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1944004 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1944004 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1950333 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile