RNA id: AMCG00020106


Basic Information

Item Value
RNA id AMCG00020106
length 5642
RNA type mRNA
GC content 0.38
exon number 10
gene id AMCG00020106
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9826766 ~ 9852546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGACAGCACCGTGCGAGCAGGCTCTAACTCCTCACATGCAAACTTTCGCTTGGGACATAATGCGGTcatgcatgttttatatatgcatgtaagTTAGTTTATTTCTTCTGCACTAACACTTGGTTTGAGAAGGTAAAACCCCTGACCAGAGGAGATACAACGTGTGGATTACCTTAAAATGAGTGTGCTGTCTATTTCTTCactcctgctgctgctctgtgttgCCTCGCAGGGAGCTGATGTGACGGACAACGACAGGATCACAAATCCTTGTTGCTTTTACCCTTGCCAAcactggggagtttgtgtgCGATATGGCTTAGACAAATATGAATGTGATTGTATTCGGACTGGCTACTATGGAGTGAATTGCACAATTCCCGAGTTTTGGACAAGAGTCCACGAATTCCTGAAGCCAAGCCCTGATATGGTTCATCACATATTGACCAATTTCAAGTGGCTATGGGATATCATCAACAAGACCTTCATCAGGGATAGACTCATGCGTCTTGTTCTGACAGTGAGAGCTAACCTGATACCAAGCCCTCCAACCTTTAACTCGAAATATGGCTACATCAGCTGGGAGGCCTATTCCAATGTCACCTACTTCACTCGCATCCTCCCCCCGGTGCCTGAAGACTGCCCAACACCAATGGGAACCAAAGGCAAAGCTAAACTTCCAGATTCAAGAGTTCTGGTTGAGAAGTTCCTACTGAGAAGGAAATTTATTCCCGATCCCCAAGGAACCAACCTGATGTTTGCCTTCTTTGCACAGCACTTCACACACCAGTTCTTTAAAACACATAATCGGATGGGCCTAGGATTTACTAAGGCTCTGGGCCATGGGCTGATCAATGGTGAGGTGTACCCGCCAAGCATGACGGAGGCTCAGGTCATCATGAGTTATCCCTCAAGCGTGCCCACGGAAAAGCGTATGGCCATTGGGCAGGAGGTGTTTGGGCTGTTGCCTGGCCTCGTGATGTATGCCACTCTTTGGCTGCGGGAGCACAACCGCGTGTGTGACATCCTGAAGGAGGAGCATCCCACCTGGGGAGACGAGCAACTGTTTCAGACGGCCCGCCTAATCATCATCGGTGAGACGATCAAGATTGTGATTGAAGATTATGTCCAGCATCTGAGTGGCTACTTTTTGAAGCTGAAGTTCGACCCAGAGCTCCTCTTTGGTGTCCAGTTCCAGTACAGAAACCGGATTGCTGTGGAGTTCAACCAGTTATATCACTGGCACCCTCTGATGCCAGATAGCTTCCTCATCAAAGGAGATGATATCCCCTACCAAAACTTTATCTTCAACACTTCAGTCCTCTTGAAATACGATATTGAAACACTGGTTGAATCCTTTTCTATACAACGGGCTGGCCAGatAGGAGGAGGGCGCAACATACACCCTGTAGTGCAGAAGGTGGCGATCGGGGTCATTGAAGAGTCCAGACATTTGAGGCTGCAGCCTTTTAACGAATACCGGAAGAGGTTCAACCTGAAGCCCTACAAATCATTTTCAGACTTCACAGGTGACGTGGAAGTTGCAAAAGAACTGGAGGAGCTGTACGGACATATCGATGCACTGGAATTTTATCCCGGCCTGCTGCTAGAACATACTCGACCCAATGCTATATTCGGCGAGAGCATGGTGGAAATAGGAGCTCCCTTTTCTCTTAAAGGCCTTCTGGGTAATCCTATTTGTTCTCCAGAGTACTGGAAACCAAGTACCTTTGGAGGGCAGACCGGTTTCAATATTGTGAACACCGCCAGCCTTAAGAAACTGGTTTGCTTGAACACAAAAAGGTGTCCGTATGTTGCATTTCATATTCCCAATGTGGATTCTAACGATGACGGGAATGTAAAGAAACCGTCTTCGGAGCTGTAAACCGGAGTTAGTTTTCATTTGGTTTATAGATGAAAATGCCATTGGACAAGTCAGTTAGATACAGtaagaaataaaagaatgaaagaaaaaagcaaattaattataAGAACAGATAAGAAATGATATTAATGAAGACACTGCCTTAGGAAGATGCTGTATTTCTAAAGAAGAGTGTGTCACATGAgcagtacttttatttttaaacactggaatttcctttttttaacctagtttctgtctttttgatgttttgtgaaaaaaaaaaaagaacattcaaATATTTCTCCCTTTGCTCTGTCTATAGTGTGCCATCTGTATCTCTTGAACAGTCAAAACACTTGTGTGATATTGCTTTCTTTCCAGCACAATCTGCTTCTTGGTCATGGGCCATGCATGATGTCTAACCAATATTACACAGTGTTTTAATGTTGAATGCTAAACTACCTCAGTGTTGAAGTATACAAGAGCATCAGAATCTATCAGTGGAATTagttttatgattttaatagTTACAACTGACACACAATTGCTGTTTCCTCCCTCAAACTCCCTCGGATTAAAAAGCTGCTactggtaaatgtattttatagacCTAAATAGCTACACAATACACTTGACAGGCACCAACTAAAAGTTAATCAAAAATCGGCTGCCATACTGATATTACGAAtcaaaaaatttaaaacattacttGTAAAACTCACTTATGTTCCacagatcatttttatttataaaattgtaaGAAAGGGTGCAAATGAGTGGAGGCTCTTGGGCCTAAATTTCAATATTGTTCAATTAATTGTAACTGTTAGTAGTAGCAGAACCACACCATAATTTCATGAGTTTTTAGTTTGTCATTTGCAGGGAATTCTAAGAATCAGCGTCATCTATCTGGCTAAGTAGTACATCTCCATGACTTTTGGTGTAAAGAAGTGCTGCTTATATTCAGACCTAAAAGTCTGGGTTTTTGCCTACATCTGTTGACTTACCAATGTTATGTAGGTTTGACTAAAGGCATTTGTGGACCATATTAgcaagtgtgtatgtatgtaataatgTATCCACACCAAGAATACAGCACTATggagtgtgtgtgctttttgtttgcAAACCGTGATTTTATTTCACCTATCttgtacatttgtaatgcttgtaatgttttaaattgtactgcATTTTTGGGTATCCATTCtttcaatctatttttttttttatctttccaTCTTCCTCCAcacttttatttccaaaatgaatTAAGTTTTTCTGAAGGTACATGGTTTTGACTTTGTGTCCTTTGATTTCCCTATTGGGCTTCTCATTTTTAGTGTTCCTCTCTTATGGGTTTTAACTGTCATGGTATTGTTGCTCTGATGTAGGGAAGGCAGGAGAGAATAGCCTGAATGCTGGATATTATTCTCAAAGTATGAAGGATATTAAAAGTGGAATCAAACTAAAAAgcagtgtttatatttttgtttcctttttaaatgtagcttTCATGTTTTTACAGGAAGGGGTGTGTTTTGACTTGTTACTGTTTGTAATGaacaattataaattaataaataaattaaagtctaCATAAAAGgaacatacacattttactgCAGATGAAAACaagcttattttaattttgtttatttgtgttaagATGGTTTTTGGAATAATTTTAAAGTATTCAGATTCCCAACTAAATGCAGTactttatattataatacaacCATCCCATTTTGAAGaaactttgaattattttgtgcataTCCTGTTAGTTTTGAGAGTGGTAAAGAATATTGTACTGATAGTAGTGTCAAGTCAGTGATCTTAGGAGTGTGATAAACCAACCatagacacaaaatacattctaCAGTTTTACAATGGGAAAGCATAGTGGTCGTTAGGATTTTCTTTATACCTTTATTAAcacacttacatttttaatttagaagcagctagaatatattttcattccACACAAGTTTTCCTGAAATTTACTTaaatttgtacacattttataatattataaacatgGAGAtgtttaagtaaaaataaaccgataacatttttttcaaaacatttgaacaatacattctaaatttgtaaaacaaatacatagtcTATAATAAgcacacactgaaatacagtaTACGTAACACAATGGATATGAAACTACTTTCTGATCCAAACGTAAGAGGTATTTCTGTTTTAAGTTTAGTCTCAGAACTCAGAGGGCGCAGAACACAAATTATTAGATGTAATGAATctattaatatttacaaatgtgttgtttacatggggggggggaatccaTACTACAAATATTCAGtgaaagaaaagggagagacCAATGTTTTCATATTCCATTAAGGCCACAGAAAAAGCTGTGTAGTTTCCCTGCTATTGTAATGCCATTATCATACACAACTTGGATAAAGCACAGTTTAGCCTGTTTGCAGTCAACGTTATAAAAGTTATACAATAAAGTAGAAAAAACAGGGCAACCATGTGAAAACTTCTAGGGTGCCAGTAGTACGTTTtacaggaaaacaggaaaatggCATTGTAAGATAATAAAAATCAACTTGTGATTAGTGAGAGGCGtgtagtataaaataatattgctcAAGACTATGCTGTGCTTTGATatctttgtttacatttctaaaacaaaagaaaggagCAATTACTGAAATTCTTTCTGTCCAAGAAGCACTCACAGTAGACTGGATTAATAATTACTCAGTCCCAATTGGCACAGTCACATTCCCATTTTCTGTTAAAGCAAACTGTTACTCAGATATTACTATGGTAACAATTTATGACAGATTACCCCCTAAACAAATCTGGAGGAATGATTCTCTGGCATGTGATATGTCACACGTTTCATAGTGGGTGCTTAAACCAGTGTTAtgaatacttatgtattttagaaaaatgGTTATGAATGGTTAAGATTATGAATGTCCTGTGGTGGTGTTATATAGTCTTTATGAAGGCTACATTGAGAGGCGTTCGAATGAAGGTGCTCATTaatgctatttttattgtatttttttataatgctgACCTTACACTAAAGATTGtatgcccccccccacccccccatccccattGTGCCTCAGTCCAGTTTTGGAGAGGTTATGGACAGGAAATGTGGCGATTTGGGAAGATGAACCATTCTCCATATATTGGGAGAAATTGTACACCAACAAAATGTGTCCTGACTTATGAACTCTGTCCTTCGAACCAAATCCCTCTGCTCATATTTGAAGACGCTCTAAAAGGAGGTCACCTCGTCACTGCCTCTGTCTGATTTAACAGTTTGCTTGCACAGTATTTCACATACATAAACAGGTGAATCCAAGCTGTCTTCGTGAGAATTTGCAATAGTATAACTATATGATTTTCTCTCATGCAAAGCTATTCATGACAGTGTATTACATATCACACAGTTATATACAAGgagagcattttttttcttattagtCCTCTGTTCCTAAAGGGATGAAAATTGAAATGATCAAGTGCAGTAAGAATCCAATAACTGAAGGCAAAGTACTtttgaataatgataataatgaactGTTATATATTTAAGTCATGTGTTACAAGTTTGAGGTATTATTTCTCATTTGGGCTGCCAACAGTATATTGACTTTTGTGCCTAAACtgaatgtaaacattttgttttaagagaaCGGTGAACTGTGGTATTTTTCATTGATTGTCTtcagaaataaagaacatttgACTTTTGA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0001822 kidney development biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0001570 vasculogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0004666 prostaglandin-endoperoxide synthase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00509 PTGS1, COX1; prostaglandin-endoperoxide synthase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 523519 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 666033 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 809360 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 1016873 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 1027599 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 75431 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 233367 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 351293 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 653862 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 844072 10696618 ~ 10698099 (-) True G61136
AMCG00020100 mRNA downstream 27608 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020098 mRNA downstream 43330 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020097 mRNA downstream 85751 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020096 mRNA downstream 88547 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020094 mRNA downstream 279185 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020107 mRNA upstream 20903 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020112 mRNA upstream 79204 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020117 mRNA upstream 374948 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020123 mRNA upstream 685736 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020125 mRNA upstream 692239 10544785 ~ 10550796 (-) True AMCG00020125
TU75987 other downstream 986821 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 998657 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2264174 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3355332 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3360180 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 902922 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1843145 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2631823 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2631823 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2638152 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile