RNA id: AMCG00020161


Basic Information

Item Value
RNA id AMCG00020161
length 1945
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00020161
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12128608 ~ 12156720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cCGTGAACTCTGACCTCCGGAAGTGAAGGTCGGTGACGATGGAGTAAAGATGGCGGCCGTGAGGCGATATGTTTTGGGAAGCGTCTGTGTATTTTTCGCCTTGATTATCAGCGAAACCAACGGCAGGCTACACCACCTCGTCCTCAAGGATGATGTCAGACACAAGGTCCACCTGAACACTTTTGGCTTCTTCAAAGATGGTTACATGACTGTGAACATGAGCAGCCTCACTCTGAGCATGGACGTCACCAATTTTGACAGCTCCACGctcGGTTTCAGCCTGGACAGGACCAGCAGCAATGGATTTTCAACCTATCTGGATGAAGATCTAGATTACTGTATACTGAAGAAGCTCCCCACCGACGAGGCAGCTCTGGTCCTACTGCTCATGGACTTTAAAAATGGCTGCCAGGGCCACGCTGACCAGGCGATGGACGGTATGAAAAAGGATAAACGAGAAACACCAGAGgTGAATAAATCTGATGTATCCTACCCTCTTCATAAAGAAGGCAACGTCTTTTCCTTCCTGTTTCACTTCAATGTGAGTACAGAAGATCAGCAGGGACTGTATAATCTGTACTTCCACAACTGCTACAACAAGGAAGTCAAGAACAGTGTGCCCCTGAAATTCAGCATCGAGATCAGCATCTCAGAGAAGAACCCCAGCAGCTTCCTGTCGGCCGGCGAGATCCCGCTGCCCAAGCTCTACATCTGCATGTCGCTCTTCTTCCTCGTCATCGGCACGTTCTGGGTCCACGTCCTCCGCAAGCGCAGGAGCGACGTCTTTAAGATCCACTGGCTCATGGCGGCGCTCCCATTCACCAAGTCTCTGTCCTTGGTTTTCCATGCTatcgattactattacatttcaaatcagGGCTTCCCCATTGAAGGATGGGCTGTGGTGTACTACATCACTCACCTGCTGAAGGGGGCGCTCCTGTTCATCACCATAGCCCTGATCGGAACAGGCTGGGCCTTCATTAAACACATCCTGTCGGACAAGGACAAAAAGATCTTCATGATTGTGATTCCACTCCAGGTCCTGGCCAACGTGGCGTATATCATCATCGAGTCCACGGAGGAGGGGACCACCGAGTATGGGCTGTGGAAGGAGATCCTCTTCCTGGTCGACCTGCTCTGCTGCGGTGCCATCCTCTTTCCCGTCGTGTGgTCAATTAGACACTTGCAAGAGGCATCAGCGACAGATGGAAAAGCTGCAATAAGCCTGGCCAAACTGAAGCTCTTCAGGCACTACTATGTAATGATTGTGTGCTACATTTACTTCACGCGGATCATCGCCATTCTCATCAAGTTCATCGTTCCCTTTCAGTGGAAGTGGCTGTATCAGCTCCTCGACGAACTGGCCACGTTGGTGTTCTTCGTCCTGACTGGGTACAAGTTCCGCCCTGCGTCTGATAACCCCTACTTGCTCCTGCCCCTGGAAGACGAGGAGGATCTCGAGATGGAGGATGGTCACCACGACCACCGGGATGACGGAGGGAGTGAAAAAGGTGAAGAAAGTATCCAACGGGCCTTCGGAAATGAGGGGGGAGCGGGAGAGCATGGCCTGAGGGAGGCAGGGGGGTGCGGGGGAGGTATGCAAAGTTGGGTCACGTTCTGGAGAGTGTGCAATCTGACCTGCCTGGGCTGGGCCACACCGGGCCGAGCTCCTGGGTGGGACTCAAACTGCTTCGACAGAGCAGCGCGGCTCTGGGCCCCGGCATCATGGACAAACACGCAACAAACCGACAAACGCAAACCCTTCAAATGTGATCTTTCATATTCTCACACTCCAGgGATcagactacaaaaaaaaaaaaaaaaaaaaaaaaaaattatcatttttaaatggtttgtaCTGAAATGCTTTGTACAGTTCTCAAACCCAGACCTTGTCGACCCCAGGGTTCTTTTAATTGTCCGTGCCCTCTCAATTCGTTAA

Function

GO: NA

KEGG:

id description
K22985 GPR107; G protein-coupled receptor 107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76759 lncRNA downstream 126517 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 200744 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 405194 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1135362 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 1159009 10967180 ~ 10969599 (-) True G61203
TU76846 lncRNA upstream 237565 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 274082 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 337081 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 421951 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 562647 12719367 ~ 12743437 (-) True G61550
AMCG00020158 mRNA downstream 43071 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020162 mRNA downstream 58865 12052214 ~ 12069743 (-) True AMCG00020162
AMCG00020159 mRNA downstream 76397 12001700 ~ 12052211 (-) True AMCG00020159
AMCG00020153 mRNA downstream 139498 11973623 ~ 11989110 (-) True AMCG00020153
AMCG00020155 mRNA downstream 167720 11959617 ~ 11960888 (-) True AMCG00020155
AMCG00020160 mRNA upstream 17968 12174688 ~ 12184458 (-) True AMCG00020160
AMCG00020164 mRNA upstream 49972 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020167 mRNA upstream 215111 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020168 mRNA upstream 219413 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020174 mRNA upstream 238835 12395555 ~ 12408952 (-) True AMCG00020174
TU76663 other downstream 426963 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1372189 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3288663 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3300499 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4566016 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 327649 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 327649 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 333978 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 333978 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 333978 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile