RNA id: AMCG00020155


Basic Information

Item Value
RNA id AMCG00020155
length 1272
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00020155
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11959617 ~ 11960888 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTACTATATCAGCTACCACAGCTTTTCAAATCAAGGCTTCCTGGAACCCCATAGGGGACCTTGGAGTGAAGGGAAGTATTCCGTGTCTGGCTGCAATGTAGCAAAAGATATGGTTGTCCCTGTGGAGAATGCCAAAGCCTTTGTTGTCTCGGCATACTCTGATGAAAGGTTCTTTCCTGGGATGGTGCGTGTGATCGGGATCGTCGATCGGGCTCAGCACTCGGAATTCTACTGCCACTTCTGCGAGGGGACACAGGCCTTCAGCAGCATGGCACAACTGGTTTTCCACAGCGACCACTTTGGATTCCCATACGGCACAGCCGATTTCTTGTGCCAGACTCCCCGCAGAGAGCGGGGCTTCCGGTTAGTCTCCGTCAGTGTCAACCCTCAGGTGGATCCAGCTGACCATTTCCTGAGTATACAGAACACAGAGAAAAATGTCTCGGCGGGCTTCCCTTACGAGTTTACAGTATGCATTTCCACCCTGTTCGGGAATTACAATAACGTGCTGCAATTCATCCAGGCCATGGAGATGTACCGGCTGCTCGGAGCTCAGAAGGTGCTGGTCTACAAGAGCAGCTGTAGCCCACAGTTGCAGAGCGTACTGGATTACTACAAAGCACTTGGAGTGCTGGAGGTAATTCCCTGGAACATCCATTTACACCTCAATGTCTCTTCCGGCTGGCTATATTCCGTGCATCCCGGGGACCTGCACTACCATGGCCAGGTTGCCGCTCTGAACGACTGTGTGTACCGCAGCATGTACACCAGCCACTATGTAGTCTTGAACGATATTGATGAGATCATCGTCCCCAGGCTGCATCAGGACTGGGGGGGCATGATGAGGTTCCTGTCCAGCAGGCACCTTGGGGTGAACGCCTTCCTCTTCGAGAACTCTGTCTTCCCCAATGGGGTGTTTGGGGATGAGGGGGCATTTGACCTTCAGCGCTGGGCAGCTGTCCCAGGGGTCAACATTCTGAGGCATGTGCACCGTGAGCCCTACCAGGTCCTGGCGTTCAATGCCAGGAAGTTGATCGTCAACCCGCGGGGTGTGATCTGGACCTCGGTGCACAAAGTGCTTTGGCTCCAAGGGGACTGGCTGAAGGTGTCTGGTACGGTGGCCCGGATGCACCACTACAGAACTCCAGATCAGCCCCAGCTGCCCAGGGAACAGTTGATCAGAGACACCAGTTTATGGAGATACAACACTTTCCTGGTCAAGAATGTGGTCCGTGTGCTACACGAGGTAAGTATGGAACCAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76703 lncRNA downstream 31753 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 236203 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 966371 10992899 ~ 10993246 (-) True G61206
TU76579 lncRNA downstream 990018 10967180 ~ 10969599 (-) True G61203
TU76577 lncRNA downstream 997107 10962311 ~ 10962510 (-) True G61201
TU76759 lncRNA upstream 40812 12001700 ~ 12002091 (-) False AMCG00020159
TU76846 lncRNA upstream 433397 12394285 ~ 12395028 (-) True G61424
TU76910 lncRNA upstream 469914 12430802 ~ 12451793 (-) True G61470
TU76926 lncRNA upstream 532913 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 617783 12578671 ~ 12583748 (-) True G61488
AMCG00020151 mRNA downstream 115902 11818725 ~ 11843715 (-) True AMCG00020151
AMCG00020139 mRNA downstream 771969 11181386 ~ 11187648 (-) True AMCG00020139
AMCG00020141 mRNA downstream 797395 11144695 ~ 11162222 (-) True AMCG00020141
AMCG00020140 mRNA downstream 849859 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020135 mRNA downstream 1015853 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020153 mRNA upstream 12735 11973623 ~ 11989110 (-) True AMCG00020153
AMCG00020159 mRNA upstream 40812 12001700 ~ 12052211 (-) True AMCG00020159
AMCG00020162 mRNA upstream 91326 12052214 ~ 12069743 (-) True AMCG00020162
AMCG00020158 mRNA upstream 109758 12070646 ~ 12085537 (-) True AMCG00020158
AMCG00020161 mRNA upstream 167720 12128608 ~ 12156720 (-) True AMCG00020161
TU76663 other downstream 257972 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1203198 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3119672 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3131508 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4397025 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 523481 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 523481 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 529810 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 529810 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 529810 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile