RNA id: TU82011


Basic Information

Item Value
RNA id TU82011
length 1952
RNA type TUCP
GC content 0.52
exon number 2
gene id G65590
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32592482 ~ 32594454 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcTCCTCAGACAAACGTTTAATGCGGTTAGTCAGATATATTTCACAGATATGTCTACGATTTTAAAAATAGTCATTTATTAGAacacttttaaaactaaaatagtttCATCATCAtgatatcatttatttatttacgagTTTAAAATTCTCTCGGACGGCTTGCTATCACCCATCAGCCGTGGGATCACACACTCAGGCAGGCAGAGTACGCTGTTCTGCTCCGGCACCCTGGATTCACCCTCAGGGGTGCGTGGCCCTGGACCTGGAGAGGCCCCATCCTGCAGGGCCTGTCAGTCAATGCAGACCAAGAACAGACAGCGCCTCAGAAACACCCCCTCCAATCACTTTGAACCTGGGGGGTCATCTCGGTCAGCTGATTCAGATGATTGGTAACAAACTGAAGATCAGAGTCCTCCGAAGCCCCTGGCACAGTGGTTTCCCTGCCCGGGCCGCCCCTGCCGAGGTGCCAACGTGGTGTCCAGTGGCGGGGGAGTCAGTCAGCGGGGCTGGTTTGCGGTCACAGAAGCGCCTCTCGTCTCTTTTCTCTTCGACCTGCTTTCACACTCACAACCAGAACCTGGACGGCTGGACCAGTGGGTCAGGACGCTGGTTGGCGTGCTGGGGTGACTGGCTGGGGAGACCGGACAGCACATCTGACAGAGGGGCCAGGGACGGCCGCCGTGGCAACAGAGCCAGTccagagaggcagagggagaggagcaTGATGGGACTGCAGAGAACAGGAGGGCGGATGTGGGAGAGAGGGGCAGGCGGGGCCAGGGAGGCACAACTAAGATTGCGTTTGTGGAGCACAGATTGGCGTGGCACGAATGCAACCTAACTGTGATGTAATACCCAGCTAGCTagctaactaactaactaactaactaactaactagaGTTACCCATCAGGACAATGactgggaaaaaaacagaatgaaatggACAGAGGgatagatagaaagaaaaagagaggacAAGATTACAGACTCCAACTCTAAGCTCCTGTTCAAAAGTTTTTACAAAGATGTCACACCTATCTGTTTATTTaccaagtttattattatttagttcattatataaattaaatttcaaaacAGACTTTCCCACAACGCCATACTAGCCTGTCTTCAGCGCATCTCCCAAGCCCAGATAAACAatctcacacacccacacactcactgatacacacacacaatcgcaCACTCCTCAGAGCACCCCAGAGGCAGCACGGACAGTCCCCACGCTGTCGCTGGTCCTGGTCTGAAGCTGTGCTCGGGTAAATCTGGTTCAGATATAACCTGCTGTTGTGTCAGTGAAAGAGGGCAGAGCACAGAGATGTGCCCAGCTGTGCTGCTGCCCCCTTCTGGTGGCACTGTGTTactgagtctctctctctccctagcTTTATCTGTCATCCCTCTTTCTGTCCCCACACCCCCttctccatctgtctctctatctcaaTGCAGcaaggaggaaagaaagaatgagagagaaaggTACAGGGGGATCTGAGTTAGGAGGTATTCatggggctgtgtgtgtgtttttgtgcaagTATGTTACAATTTGAGTGTGCATGTAAGTGTGACTATGTCTACGTTAGTGTGCCTCAGTTAGTGCGTcagtgtgtgctctgtgtctttctgaaacagacagacagacagacagacccctCCTCAATGACTCCAGACAGATCGACCAGCTCTCAGCACTCTCTGTCCGAACctctgtctcgctctctctctctggggggggggggggggggggggggggggggggggctaggGTCGGAGGTCATTGCTCCTTCACGGTCAGCCGCTCCAGCTTCCCCACCGCCTCCTCTGTCACGACCTTTGTCTTCCTCTCTGGGCTGGGCGTGTTGGGGTACCCCCGGTCCCCGAAGATTGTACTGCCCACCCTCACGTTGGTAGAGCCCACTTCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81997 lncRNA upstream 6768 32563430 ~ 32585714 (+) True G65579
TU81944 lncRNA upstream 147838 32443881 ~ 32444644 (+) True G65534
TU81909 lncRNA upstream 284763 32307438 ~ 32307719 (+) True G65503
TU81854 lncRNA upstream 323025 32268626 ~ 32269457 (+) True G65452
TU81835 lncRNA upstream 324281 32182362 ~ 32268201 (+) True G65437
TU82017 lncRNA downstream 35269 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA downstream 35269 32629723 ~ 32686320 (+) False G65594
TU82043 lncRNA downstream 146746 32741200 ~ 32744735 (+) False AMCG00020783
TU82117 lncRNA downstream 284645 32879099 ~ 32882118 (+) True G65670
TU82306 lncRNA downstream 1455540 34049994 ~ 34051037 (+) True G65829
AMCG00020770 mRNA upstream 41101 32540939 ~ 32551381 (+) True AMCG00020770
AMCG00020766 mRNA upstream 64448 32520199 ~ 32528034 (+) True AMCG00020766
AMCG00020759 mRNA upstream 137649 32450177 ~ 32454833 (+) True AMCG00020759
AMCG00020755 mRNA upstream 229820 32357858 ~ 32362662 (+) True AMCG00020755
AMCG00020756 mRNA upstream 236653 32346662 ~ 32355829 (+) True AMCG00020756
AMCG00020771 mRNA downstream 11317 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020772 mRNA downstream 57278 32651732 ~ 32656484 (+) True AMCG00020772
AMCG00020783 mRNA downstream 113479 32707933 ~ 32742239 (+) True AMCG00020783
AMCG00020782 mRNA downstream 172878 32767332 ~ 32770643 (+) True AMCG00020782
AMCG00020786 mRNA downstream 216839 32811293 ~ 32824902 (+) True AMCG00020786
TU81856 other upstream 313510 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 403101 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 497296 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 727776 31863383 ~ 31864706 (+) True G65343
TU81555 other upstream 1108012 31459502 ~ 31484470 (+) True AMCG00020715
TU82142 other downstream 352277 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 513419 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1360352 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1464657 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 1810080 34404534 ~ 34411620 (+) True AMCG00020820

Expression Profile