RNA id: AMCG00020783


Basic Information

Item Value
RNA id AMCG00020783
length 5464
RNA type mRNA
GC content 0.56
exon number 50
gene id AMCG00020783
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32707933 ~ 32744735 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCATGGCGGAACTGTAGTGTCCCGGACGAGAAAGTTATGCCCTCCGCCCGGagtttgttcatgtatttatttatttattacccgTAATCCCGCGTTTTCCCTAAAATGACTCGCTGGATACCCACGAAGAAGGAGAAGTACGGCGTGGtgatCTACAACTATGATGCTAAGGAGGAGCACGAGCTCAGCCTGCAGGTGGGAGATGCTGTTCACATCCTGGAGACCTTTGAAGggTGGTACAGAGGCTACACACTGCGAGACAAATCACGGAAGGGTATCTTCCCAGCTTCCTACATCCACCTGAAGGAGGCGCAGGTAGAAGGAACAGGgcAGCAGGAAATAGTCATCCCCACTGATCAGCCCCTGGTGCAGGAGCTGGGCGCCACCCTGAGAGAATGGGCACAGATCTGGCACAAGCTCTACGTGAACAACAAGACCACACAGTTCCGCCACGTGCAGCAGATGACCTACAGCCTGATCGAGTATCGCTCCCAGATTGTGTCGGGGACGCTGCCCAAAGATGACCTGGTGGAGCTGAAGAAGAAAGTGACGGCCAAGATCGACTATGGCAACCGGATTTTGGACCTGGACCTGGTGGTGCGGGACGAGGGGGGGAACACACTGGACCcggacagcagcagcaccatCAGCCTGTTCCGCGCTCACGAGACGGCCTCCCGCTGCATTGATGAGCGCATCCAGGAGGAGAAGACTCGGCTGCAGAACCTGGAGAGGAGCCGCCAGTCCCTGTTCAGCACGGTTCACACGTACAGCCTCTTCATGAACCTCAAGAACTTCGTCTGCAACATCGGGGAGGATGCCGAGCTGCTCATGTCCCTGTACGACCCCGACCAGTCCGAGTTCAtcagCGAGAACTTTCTGGTACGCTGGGACAGCAAGGGGATGCCCAAGGAGATTGAGAGGCTAAATAACCTGCCAGCGCTGTTCACGGACCTGAGCAGCAGTGACCTGATCCGACCTCGCTTGTTCCTGGTGTGTCAGATCATCCGGGTGGGCTGCATGGAGTTGAAGGAGGGCAAGAAACACACGGGGGGGTTGCGACGCCCCTTCGGAGTGGCAGTGATGGACGTCACGGACATCGCTCACGGGAAAGTGGACGACGAAGACAAGCAGCATTTCATCCCATTCCAGCAgATCGCCATGGAGACATACATCCGTCAGAGGCAACTGATCATGTCTCCGCTGATCCCCTCGCGGGTGATCGGGGAGAACGAGCCCCTGACCTCTGTCTTCAACAAGGTCATCGCCAGCAGAGAGGTCAACCACAAAGGTCAAGGACTGTTTGTCACTCTGAAGCTGCTTCCGGGGGATCTCTCTCAGGTCAAGAAAGATTACCCCCACTTTGTGGATCGGACCACTGCCATTGTGAGGAAAATGGGCTTCCCCGAAATCATTCTCCCAGGGAATGTGCGCAACGACATCTATGTGACGCTGCTGCAGGGCGAGTTCGACCGGGGCAAGAAGAAGACGCCCAAGAATGTGGAGGTGACGATGAGCGTGCTGGACGAGGACGGGACGCCGATGGAGAAAGCTATATTCCCTGGAGCCGGCTACGATGGCATCACAGAGTACAAGTCTGTCATTTACTACCAGGTCAAGCAGCCCTGCTGGAACGAGACGGTCAAGgtggcAATTCCCATTGAAGATGTGGGTCGCTGTCACCTCCAGCTGATGTTCCGGCACCGCTCCTCGCAGGACTCCAGGGACAAGTCGGAAAAGCCGTTTGGAATGGCGTTCGTCAGGCTGATGAAACCCGATGGCACCACCCTGCGAGACGGGAAGCACGACCTCATCGTTTACAAGGGAGATGTTAAGAAGGCGGAGGATGCACGGGCGTATCTGAGCATGCCCAGCACGTGGACTGaggtggaggagaaggagaggcagTCTGGGAAGCAGTTCCATCACTCCGGCACCGTCCCCATCACCAAGGACAGCTTCCAGATCGCCACGCTCACCTGCTCCACCAAGCTCACTCAGAACGTGGACCTGCTGGGGCTCCTGAACTGGCGCTCGAACCCTGAGCAGCTGGAGCAGACCCTGGGCAGGTTGATGGAGGTGGAGGGGAGCGAGATCGTAAAGTTCCTGCAGGACACTCTGGATGCCCTCTTCAACATTATGATGGTGACGTCAGAGAAGGAGACCTATGACAAGCCAGTCTTCAATGCCCTGgtgttCATCATCACGCTCATAGGAGACATCAAGTTCCAGCACTTCAACCCTGTGCTGGAGACGTACATCACCAAGCACTTCAGCGCTACGCTGGCCTTTTCGAAGCTGACCAAGGTGCTGAATTTCTACGTGGGGAACGCGGAGGACACCAGCCTGACGGAGCTGCTGTACTCGGCCCTGAAAGCCATGAAGTATCTCTTCCGCTTCATCGTGCAGTCCCGTGTGCTCTACCTCAGGTTTTATGGGAACAACGAGGATGGGGACGAGTTTCTTAACTCCATTCGGATGCTCTTCCTATCTTTCAACACACTGATGGACCGACCGCTGGACGAGGGGGTGAAAATCAAAGGCGCCATTCTGAAATACATCCCCACCATCATCAACGATGTCCAGCTGGTGTTTGACGTGGTGGAGCTCAGCGTACTCCTGACCAAGTTCATCGAGAGTATCCCTGATGCCCAGTTGGTCCGTCAGAAGCTAGGCTGTATGTGTAAGATAGTGGAGAGTGACCTCTTTCGCCAGCCAGAGTGTCGGGACATCCTGCTCCCACTGATGACTGACCAGCTGAGCGGTCAGCTGGACGACTACTCCAACAAGCCGGACTACGAGGCCTGCGCCCAGCTGCTCAGCACCGTGTTGGACATGCTGGACAGGAAGGATGTGGGTCCCACCAGGAGTCACATCCAGTTGATTATGGAGCGCCTCCTCCGCAGGGTGAATCGCACCGTCATCAGCATGAACCGCAACTCCCCCCTCATTGGTCACTACTTGGCATGCATGACAGCACTCCTGAAACAGATGGACGACAGTCACTACACTCACTACATCAGCACCTTCAAGACTCGACAGGACATTATCGATTTCCTGATGGAGACATTCATCATGTTTAAAGATCTGATCGGGAATGTCTTCCCCAGTGACTGGATGATCATGAACCTCCTTCAGATCAGaGTGTTTCTACGAGCAATCAACCAATACTCTGAAGTCCTCAATAAATATTTCCTGGACCAGGCTCATTTTCAGCTGCagCTCTGGAACAACTACTTCCACCTCACCGTGGCCTTCCTCACTCACAGATCCCTGCAGCTAGAGACCTTCTCTCTGGAGAAACGCACCAAGATCCTCAACAAATATGGAGACATGAGGAAGGAAATCGGCTTCAAGATTCGAGACATGTGGTACAACCTGGGCCCGCACAAGATGAAGTTTATCCCGTCCATGGTGGGGCCCATCCTGGAGGTGACGCTGGTCCCAGAGCCCGACCTGAGGAAAGCCACCATCCCCATCTTCTTTGACATGATGCAGTGTGAGCACAACTTCAGCCACAACCACACCTTCCACATGTTCGAGAATGAACTCATCACCAAGCTGGATCAAGAGGTGGAAGGCGGCCGAGGGGACAAGCAGTACAAGTTCTTGCTAGAGAAGACGCTGCTGGAGCACTGTCGCAGACACCGCTACCTCTCCCAGTCGGGGGAGGCCCTGGCTCTCCTGCTCAGCAGCCTCTTGGAGAACCTGCTGGCCTATAGCACCATCACCCATGACGAAAGCCCCGAGCATCGCATGAGCTGCACTGTCAATGTGCTGAACTTCTAcaaggagaagaagagagaggataTCTATATTAGGTACCTGTACAAGCTTCGAGATCTGCACCTGGACTGCGAGAACTTCACAGAGGCGTCCTACACCCTCCTGCTGCACGCTGAGCTTCTGGAGTGGTCCGACAAGCCCTGCCTCTCCCACCTCATCCCACGGGCTGGCTCTCAGGTGTCCTCCCAGCAGGAGCTGAAGGAGAAACTGTTCCAGGAAATCATCAGCTATCTGGACAAGGGGAAGATGTGGGAGAAGGCCATTGAGTTGAGTAAGGAGCTCGCTGGGATGTATGAGAATCAGATCTTTGACTTCATGGAGCTCAGCCAGCTGCTGAAGCAGCAGGCCCGATTCTACGAGAACATCATGCACGCCATGCGCCCACAGCCCGAGTACTTTGCGGTGGGATACTACGGCCAAGGCTTCCCCTCCTTCCTCCGGAATAAGGTCTTCATCCACCGGGGTAAAGAGTACGAGTGGCTTGAGGACTTCAGCCAGAAGCTGCTGTCCCAGTTCCCCATGGCAGTGAGGATGACCAGCACAGCACCCCCTGACATCCAGAGTTTCACTGTCAAGCCGGTGCTCAGCCTTCCACCGCGATTCAAGGACAAAGGAGTGCCAGAGCAGATACTGAACTATTACAGAACCAATGAGGTGGACCAGTTCCAATACTCGCGGCCCTTCAGGAAAGGGGAAAAGAACCCAGACAACGAGTTTGCAACCATGTGGATCGAGAGGACCACCTACATCACCGCTTACAAGTTCCCCGGCATCCTGAAGTGGTTTGAAGTGAAGTCCGTCTCTGTTGAGGAGATAAGTCCTCTGCAGAACGCGATAGAGACGATGGAGATGGCCAACGAGAAGCTGAGTAACCTGGTGCAGCAGCAGGCCTGCGACCGAGCCCTGTCTGTCCACCCACTGTCCATGATGCTCAACGGCATCATCCCGCTGCTGGCTGATGGGATTCGGATTCACGGGGAGAAATCCACCGAGCAGCTGAAGCCGCTGCACAACCACCTGGTCACCTGCTTCCAGGAGCTGAGGGAGAAAGTGGAGAAACACTATGGGGTCATTACTCTGccctGCTCTCTGACCGAGAGGAAGAAGAGCCGTGTGGGCTCGGCAGTGATGCCGTACATCATGTCGTCCACACTACGCCGCATGTCCACCGTGTCCACTCTGTCCTCTGTCTCCTCGGGGCTCAGCAGCAGCTCCGGCTCGTCTGACGGCACCCCCTCCCGGCCGTGCTCCCAGGActctctgCTGTCCCAAGGGAATGAccgcagaacctctgtcctgtCTCGCTCAGAGGAGGACAACCGGATAGGCCGCAAAAATCGGAAGGAGTGGAGTGTTAGCAAATCCCAGGTCCTGGTGGAGAGGCAGGCGGACACTGACGAGACACCCCCTGAGAGACCCCAGAGACCCAAGAGTCTGCAGTTTGGTGACCGGCGCCTCACCCTGTCTCTGTTCCAGGGGGCATCATCACAACTCAACCTGGCCAACCCCCTcagccccctcccctcctccccccacacGCCCCGCAGCTCCAGTTTCACTTCCCTCCAGAGCGATGGGGAGGTGACCTCTGACATCCCGGGCACGCCTCCGCCCATGCCACCAAAAAGACACCCTCTGGACAGCGACAGTCCACGGAACTCGGTGGAGGTAGGCTGA

Function

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K17707 DOCK5; dedicator of cytokinesis protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82017 lncRNA upstream 21613 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 21613 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 122219 32563430 ~ 32585714 (+) True G65579
TU81944 lncRNA upstream 263289 32443881 ~ 32444644 (+) True G65534
TU81909 lncRNA upstream 400214 32307438 ~ 32307719 (+) True G65503
TU82117 lncRNA downstream 136860 32879099 ~ 32882118 (+) True G65670
TU82306 lncRNA downstream 1307755 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 1319913 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 1480107 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 1497650 34239889 ~ 34267100 (+) True G65877
AMCG00020772 mRNA upstream 51449 32651732 ~ 32656484 (+) True AMCG00020772
AMCG00020771 mRNA upstream 99381 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020770 mRNA upstream 156552 32540939 ~ 32551381 (+) True AMCG00020770
AMCG00020766 mRNA upstream 179899 32520199 ~ 32528034 (+) True AMCG00020766
AMCG00020759 mRNA upstream 253100 32450177 ~ 32454833 (+) True AMCG00020759
AMCG00020782 mRNA downstream 25093 32767332 ~ 32770643 (+) True AMCG00020782
AMCG00020786 mRNA downstream 69054 32811293 ~ 32824902 (+) True AMCG00020786
AMCG00020789 mRNA downstream 175381 32917620 ~ 32923763 (+) True AMCG00020789
AMCG00020791 mRNA downstream 421176 33163415 ~ 33179686 (+) True AMCG00020791
AMCG00020793 mRNA downstream 914387 33656626 ~ 33660550 (+) True AMCG00020793
TU82011 other upstream 113479 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 428961 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 518552 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 612747 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 843227 31863383 ~ 31864706 (+) True G65343
TU82142 other downstream 204492 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 365634 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1212567 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1316872 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 1662295 34404534 ~ 34411620 (+) True AMCG00020820

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_10894958_10954990.mRNA True 5599 mRNA 0.48 49 CI01000010 10894917 ~ 10954990 (-)