RNA id: TU83369


Basic Information

Item Value
RNA id TU83369
length 5129
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G66701
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37304049 ~ 37309335 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCCACTCTAAACAATgacattactttttttgtgtgtgcaaataCATTATGTACAATTCTTATAAATATGGCatcttcgtttttttttttgttaaaaaagaatataaagaaaaatgtgcacaaTACAGCAGGTAAAATGGGGCTTCTGAAAATGAAGCAGAGtccactttaaattatttacgaaagaaaagaaagaaaaacatttttacagaaataCTAAAATCGCAAACAGCAGTTGATTCCACCCGTGTATTTTGCTAGTGGGTCACAATGGTTCTTGTTCTTGTAGTACTTGATTGTTCTCAATTGAACACCGAGGTTGAAGCAGGAGGTTGCACAGACCTATAGACCTACAGGCGTCAGACCTGCAGGACAAGACAGAGGACAACTACAGTCAATCAATTGGGTTTCTATACCGAGTTCAGTGTGGTTACAATTCAGATTGCCTTTTCAGCACAGAGAACAAATTcaaatacacagataaataaactGGCTAATTTTCAGCCTGTATTTCTGCTGTCCCTACCCTgcttttaaagctgtaattagcatCGGTAACCCATGTAACTTTCTCAATTATTACACAGAACTAATGACGGATCACATATTCATTAATCTTTTTTCCATTACAAGGATGCTCTTCAAACTGCAATCTCATGATACAGAGCAATGTACCTGCTGGAGTAAGTAACTTGTCAGCAAGTGTGCGGTCATGAATTTCTATGAGTGATAAGATTCATTGAAcacaattgatttttaaaaatatatgtattttagtagtctgcatattaaaaacatgtggTGTATTGAAAAATTggcacttaaaaatataaatccaaGTATGGGGCCCAACATACACTTTGAGGAGAGCTCCTTCTGAGCTGAATCACTCCAATTGTAACTGACTAGTTAATTACTCTAAACGTGCTCAATATCCATGGTTTAAACTGTGTCTTTCTAATGCAAATTGattaataaaagtataatttgtCATCAGCGCTCTAATTACATTTAGAAACAGACATGGATGAATAACAACAAAGTGTAGCTTTAAGGATAGGTAGGGAGAGCAGAAACATTGGTAATAAGATAAGCAAGCCTATAGATAATTGGACTTATTCTTCGCCTCAGCATCCACCCTTTCTTGATCTGAAATGAAACCACAGTCTGTATCTAACAGGTCAAAGATCTGCTGATGCTGCAAGACTAGAAGCACCGAAGACCTCACAGTTATGGGGCACTTTGAGACCGAACTCCTTGTTAGGCAGACTAAATTGTAACACTAACAAATTAATTGTAACAAATATATTGAGCAGCAATGGTCATTTACATTCCACATGGCAGTGTCAAAATACAAGTCTTcaatagaacaaaaacaaacaccccaAAACATTTTTCCTTCTGTTGTTACGCAGATACTGAATTTGCAATCTCCTGTTCACTAATATAATCATGCTAATTTGCACACTGAAGTAAGAATTGGAGCTGTTCGGTAACATTTCAGAGCTGCCGATTACGGGGATAGTTATTAACTGCAGTCGCTGTTCGATGCAAAAACAGATCAAAAAGACTGAAGATGCCAAAAGCTTGTGCATTAGGCGGTGAAGTTAAAGAGATGAATatgacaaaacacaacaacaatataaaggTTAAGGCTCTTCTATGTCAAAGGTTCCAATCTGCTCATGTTGGAAGTGCACAGAATCTATAACCTGGTTTTCTAGATGTCCTGGATATTAGAAAGGTCTGCCTGTGAATGTCACCGAGAGGCCGTGCAACGCTCTGCACTCGGCAGTAACTTccccacctacacacacacacattcacaagaCTATGAAATGACCGAAAAACACATCCTGGCCCCCTCATCCCATTGCTCTCTCTTAAGATGCATTAGGCCAGGGCTGCTATGTGAATTTCTGGCTTACAGGCACTACACATCAGTCCTGGCATTGTGAAACATGCCATCTTTCCAGGGCTGGGATGAAATCAAATCTTTCACCCACCCACtattagaaaactacagaactgtactttGTTGTGGCTGCATTTGTGTTGCTACTTCCtgttaatcataaatgtaacagctatgatgtacagctttgtagtttgctattggCGTGGTCAAAGATTTGAATTAATCCCACCCTAGGTCTCTGAGTTTGTAATTGACTACAATTAAAACCTAACTGTAGGTTACACCTGTGCCACTGTTTCTGTACTATTGAATTAGTGGATGATCAATTACTATGCAAATGCACGGTCATACTCAGTATCACAGTAAAATATGATCCATTGTGTATCAGGATATTactaatacaaacacacacatttccattaCTTTCAGTGCCATTCTAATGAGGGCAAAAGGACTCTGATTTTAACAGAGCACAATCTCACTGGAAATGGATCTTCAATTGCAGCTCCAAATACTGCAGTTTGGAACAAATTTCAAACAGCTTGGACACCAGGCCTACATGAGAGACTGGCTTTCTAGTTTAACTGACCAGTGTTGCTCTGTGAATAATTGGCAAAAATTGACCCAAGTAGATCTGatattagagaaaaaaaaaaagcactttaacAGGAAGTACAAATACCGAAgcatacaaaatgattgaaGGGAAAACAGGATTGGAGCAACATGCAACCACAACAGATAAGAGTCTCTAAAATAGATCAGTCTCATACATAAAAGGCTGTTCCTTTCCTACTGTGAAAGATTACATTGTAGAAGCACACCTTCCAATTTACTTTATATGATCACATTGTGATTGTAATCTCAATGTTTTTTTGGGTGTAGgttcataataaatacataaatatatgaagAAATTACTTTAAAACTGACTTCCAAGCTTCTGCCCCAATTTTCTCTCAGGCAAAAATAAACCAACGCATGGAAAGCAAAAGCCTTTTTTTCCAGTATCCTAATTATGTtagaagtttaaaaaacaaacaaccgccccccccaaaaaaaaacattaaaaacaattttttaattcacatcAGGCACGTATGAACACAGAAATATACCTGTCGACCATATATTaatttttagtattattttttatttggttttgtttatttatattcattctGTAGGTCAACATTTACATCAATAGGATTTGCATTTGAGGATATTTTATACCATCTGCCAGTAATTTGTATATTGATTACTTAATGATTTTTTCTGGTTTCTGGACTGCAGACCTAGTCGTTAGGCTGACTGAATTAATAGGTCAAATTGTCATGGTCTTAAGGGGAGCACATACCCCAAGACTGCTGTGACCCCAAATCATGAGAAGAGCGCAAAACATTTACAAGATCCGGACTGTCAACAACAGCAATGTGTGTTACAGAAGGGGGCGGCCCGGGAAGACTGCTAtaagggaaaaacaacaactcttaGTCCAGAACTAAactgagtgtgtgagtgttgatACTTTAATATGCAAGATTATAGAAtaaattcttaatttattttggccATGAATTCAGAGATGTTCTCTCGGTCACAAGGATAGAGGAGGTCATGATATGTAAAACTAATTGTTAGTGCTTTCGTACAACTGTAACTGGATAAAATATAACTGAGAAGTTTAACCTTTAAATGCTGGTGTGAATGTACCTTTCACTGTAGCACTGAACGCCCCACTTGAACTCCTCGACCAGGAAGCGGATTCTACATGATCAGTTAAGCCAGATCCTCTTCACAGCTGCAAACCCTGAAGAAATCAGCGGCTCCTCCTCACTCAGGTATAACAAACAACCCTACAGAGAAGAACTGgtctactgtttttttttgttatttcataaCTGTTCAGTACTTAATGGATTCAATTCAGTTGCTTAATTTGTCAAAGGTATCATCTACCCAAGATATTCAGGGGTTGATTATTTAGAAACCTATACAACCTGCAGGATTGTACTACTGGAGTTggatattgaaaaTGTAAATCAAGTTTCCAACAGCCACCCTCAGAGTGCTTCCTGCTCCTTTCTTGTTCAAAAAGTGCACAACTCAGTGCTGTAATAAATGAGAACAATGGTATCAAAACCACACGCATGTCGTTAACCAAACTTCAAGTATCTGGGACCAGAACACAGGATTGTCTGTAGACCACTTAAGGAAGCATTGCAAGATCAGTGACAATGCTGCCAATTTAATACTACTTTCATAATTGAGATTTCAGGaataagtattaatttaagaCATTGCTTCTATCCATTATGAAATTCCCCAACGAAGTGAATGCTGTGCCGAGTTTGCCATCCTTCACCAGTGTCCCACGAAGTTAATCAGCAGTTCCTCTCCACTGACACTCAGACAAAGCTTGATTCACCCACTGACTGGAGAGAAATACCAAACCATTGATACAGTtcacaactgaaaaacatatcTTCTGAACTTAGAAGCTTGACATAGTTTCTTGGCTTTGCTGACTTGTCCGTACAAAGGTTGACATCTTTCGACTGGatgaaaaactaataaataggcAATAGAATTTTTTTTACTGACaataaaagaagcaaaaaaaaaaaaaatcacattgctTATTCAGCAGAAGTACAGGATCCCAGTTCTTCATAGTAGTCCTACTCCCACCCACCTGGGCGGAGCATCTCGTTGACCTCGCGGTTAACAGCCCCTACTGAACTCCCCGGACTAGAGCAGCAACTGTTGGCCGATCTTGGAGAAACAAGCCTGGACTCTTCATGGGAAGCTTGCGTTTCTTCAGATGGGATTCCTGAAACTGGGAACCACCTCTGAAATTAGCTGCAATTTCCCTCGTTCCCACAGCCCGAATCCAAGGCTCTCATGATCGACCAGGGATGAGACGACAATCAGAGCTTCCTGTGGGGCAGCCTCAGAGAGTGATGGGGATTGTGGGAGAGTTCCGCCCCTCTTCCAGCCACATGGCGgccgaggaagaggaggaggtggagattgaggagagggaggggaggctGCGCTGCATGCGCCGGTGGATCCTGCGCAGACGGAGAAGGTAGAGCAGGATGGAGAGCAGCACCACCAGGAAGCAGGCCAGGAAAAGGTAGTGATTGTTGACGAAGGTGAAACTACCTCTCCAGTGAGAGTGCGCCCCCTTCAGGATCTCCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83368 lncRNA upstream 2451 37301248 ~ 37301598 (+) True G66700
TU83364 lncRNA upstream 15208 37288514 ~ 37288841 (+) True G66696
TU83253 lncRNA upstream 229415 37073679 ~ 37074634 (+) True G66602
TU83177 lncRNA upstream 497472 36806320 ~ 36806577 (+) True G66528
TU83173 lncRNA upstream 578920 36724894 ~ 36725129 (+) True G66524
TU83422 lncRNA downstream 185786 37495121 ~ 37495381 (+) True G66739
TU83445 lncRNA downstream 262034 37571369 ~ 37575810 (+) False AMCG00020942
TU83465 lncRNA downstream 341094 37650429 ~ 37650698 (+) True G66780
TU83471 lncRNA downstream 428397 37737732 ~ 37739188 (+) True G66784
TU83489 lncRNA downstream 527767 37837102 ~ 37862332 (+) True G66801
AMCG00020931 mRNA upstream 77180 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020930 mRNA upstream 118121 37183664 ~ 37185928 (+) True AMCG00020930
AMCG00020926 mRNA upstream 138747 37158652 ~ 37165302 (+) True AMCG00020926
AMCG00020925 mRNA upstream 191959 37094286 ~ 37112090 (+) True AMCG00020925
AMCG00020919 mRNA upstream 246013 37047642 ~ 37058036 (+) True AMCG00020919
AMCG00020942 mRNA downstream 257701 37567036 ~ 37575856 (+) True AMCG00020942
AMCG00020941 mRNA downstream 319989 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020945 mRNA downstream 360627 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020944 mRNA downstream 403664 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020946 mRNA downstream 596936 37906271 ~ 37922454 (+) True AMCG00020946
TU83200 other upstream 386613 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1047538 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1395647 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 1553695 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2139064 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 3011778 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3742137 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 4288888 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4743595 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 5116776 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile