RNA id: TU83489


Basic Information

Item Value
RNA id TU83489
length 3495
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G66801
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 37837102 ~ 37862332 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCGGCTGCATCAATTGtttatgatttgtttgcatTCACAATATGGAGTTCACTGTGACATTAAggaattgttctttttttcGGGGGTGGTATCCATAAGACTCAAGCTACAGTTCAACACAAGGACCCACTCTGTTTATCTTTCAGCTGAGTAACAATGCAAGTTCAGAGGAAACTGTCTTTATAGTGATCCATCATCCGTGATTTCATAGAATCACCATTAAAAACAGCTTCATCTTTGTGTGGTGGAGTATGCCTTTATGCTGAAACGTACACCTAGGCCttgaaaataaaccattttaggATCCATTGCCATTACCAGAACAGCCATAGCAAAACCAGGATTGGTTAGAAGATCTGTGGAAAATTCCTATTTTGTAGGAAGTTTGCTAATGCCTAGTCTTAGCTTAAATCAACAGGAAACTAAATTGATCAAGGagtctattttaaatgaacaaaatgaattGCCACAAAACTGTTTCAGTTCAGACTTTAGAGGAAAAATTACTAGAATGTTACATTCATTATCATAATGTGCCTATTTGTAACGTTGTTGGCTAAATGAGAATTActgcaatatttttatatatatcaggTATTGcacaatgcatttcttttcagtttctgaACGAAACCAaggaaatacaatatacagcaaTGCTCTCCCATACAATGGAGTAGTTTCCCTATAAACATATCTTGCATTATTACAGTTGGTTCACTATGGCTtaagtattatgtttttttccttcactgatTCTAGTTGGTATTCCCAGATGAAAGCTAGACAGAAGTGGGAACAATGCGAGACGAGacaaagggggggaaaaaaggcatGAAAAACGTCAGCATTACATCACTTGACAAAACCACTATAGCCTGGTCTCGCTTTGCtgcatacagtgaggaaaataacaaaatctgcTGCAAAATTTGTTTgttcccaaacacacacacacacacacacagaaagcgAGAAATAAGAGACAAAAGACACTTGGAACAGGATAGAAGGGACACCATCTTCACACTCTTGAGAACAGCTTTGTAAAGAagacacagaaataaagaattCTTCTTAAAACTATAATATATCATCGTAATCATAAgaataatatatgtttatatattgatacTCACTTCATACATTCATTCTATAGCACTATCtatattcacatttattctTAACCGTGATATTTGAAATatcttttaaacactttttatgTACTGTACTTATACtattattcagaaaataaagggaaaaaaggaggacatttttttttcctaacatTGGCGTTATACACCAGGGTGTGTGATGAAGGGGTGCAAAGTTCATGATCCAGTTTGGTTTTTGCGGGTTTAACAATATACACCATTGTGAAGAACAGAGAACACAAAGTGAGGAGTAGGGTAGCAAAATGACCTGGAGGGATGATGCCATGGAGAGAAAATGGCCAATGCAGGGGAGTAATGAATGACAGCAGTGTAGGCCTGAAAAAAAACTGGGAGGGAATGTTCACTGTGGGGGCAAAAACAGACATCCCCCCTACCCTCcatattcataaatacattaaaatctgCCTCCATGTGAAAAGCAAGTTTCTCCTTTCCAATGGTGGAATCCATTATTGGTCCAAAGCTCGATGAAGTACATTAGCCAGAGCTCCATCCACACTAAGGTGGGGTATGAATGCATCCTCGATACTTGTCCAAAGTGTCCCTGGTCAGTTACCCCTTATACACACCCCACTTCAAAAGCCTCCTCAGCCTCCACTGCCAAGCATAGaaaatctgcatttcatttcGTCAGGGCTGTGCCCAAATAAGTCTCAGAGACACAGGTATGCTGTGCCCAAGACCCCCCAACCTCCACCTTACATGCATAAAAAAAAGGCTATGACCTGCATTagaaaccaataaaaaaaaaaaaaaaaaattcagaattACTTGAATGGCTTGATACAATCATGCCTCAAACTACATTCCCCTGCACCAGAGTAATTGAGTTTTCATTGTATAATCTTATggatattaattattatgattttggTCTTGTCTGTACAGACTATGTCTAGAACAGCAGTTCCCAAACATGGTCACACTGCGACCCAGCTATTTGTGATATTAAAGTATTGCAGTATCCGCCACAATATGAACTATACagccaacatacattttattgcatttaaaacatacacatgcGTTCATACAAAgggaacaaaataaaccattgtagcactttgaattattttcttacaattttgatagattttttttaatgtggattTGAGAGGAATGCGATAGGTTGTAGGACAAAAACTGCTGTGGACTGGCATCCAATCCAGTAGACTGGTGTTTGGGAACCAGTGCTCTAGAAGATGTGTTGACAAATATGCAGATTTATCATTGTTTCCAGATGGTGTAGGTCACAGagcaagaaaatataaatgggGGGGTGGAATCAAAATCATACAAGGAAAACAAGCTACTCCACTTCTAGGCAGTGTGGATGGATGCAAACTGCTCTGTGTGTATGAAAGCTTTCATGAATCTGAGAGAAGAGGagaatattttcttaaatcaagCATAATCCTTTGTGAATCCTAGAAAATGTAGCATTTAAAACCTGAAACCATACGTAATGACAGACTGATCGTCGACACCAAAGACACCTCCAGTAAAGTGCACACAGTCGGGAAACCACTTGCCCAATTCTGATTCACCTCCCTAAATACACAATGACacatgtgttttgcttttttccataCGTGTTCTACAGCAGTCACCTCTTTCCTGGACAGCATTATAAGCCTATGCAcactaaacaaataactaaaaaagCCAACAAAATCATAGTGGCAAAGACAATAGTAgtgaaagaacaaacaaacattatacCCAGTTTAGTAACAGGAGTAACGTGTACATGTACCGTAGTATACGTATACAAGAGTTCCATGCAAGAATCTTTTGTGGAATGGTAAGATGACATTGGAATGACGAAGAGCACTGTGGGTTTCGAAGGTAATGGCTGAGTGGGGAATATGGGTAATGTAGGCAATGGTTGAGCAGGGAATTATAGGGATTGTAGTACTGGGGTGATCATTGTTGGGGTTCTGGTTATGTACAAACACGGGAGGTTTCAATTAAGACAGTTGCAATCAAACACCCAAGGGAGCATTATTTTACAGAAGTATATTACACGCAGTGGAAGCCAGCTCTGCTAGCGGTAATGGGGGCTTTTTACGGTGCAACAGGGAGCATAAGAGATGTGCGATATACCTGGAGCAGTGAAAGACTATTTGGGGGTCTATGTACAGGTAATACCTTTGGCAAACTAAGTGCGGGTAACTAGGGATGCCAAGAACAAGTCTGTTGGTGCTAAAAGATCTTCCCAAAATCTCTTAATGCCATGCTTCCAGGAACTGTTTCTGGACagcagaatgtgtgtgtgtattgaaggAAAGGGGGGGGCTGTGGGGTTGTTGGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83471 lncRNA upstream 97914 37737732 ~ 37739188 (+) True G66784
TU83465 lncRNA upstream 186404 37650429 ~ 37650698 (+) True G66780
TU83445 lncRNA upstream 261292 37571369 ~ 37575810 (+) False AMCG00020942
TU83422 lncRNA upstream 341721 37495121 ~ 37495381 (+) True G66739
TU83369 lncRNA upstream 527767 37304049 ~ 37309335 (+) True G66701
TU83521 lncRNA downstream 112471 37974803 ~ 38065665 (+) True G66826
TU83538 lncRNA downstream 259447 38121779 ~ 38123587 (+) False AMCG00020954
TU83564 lncRNA downstream 378358 38240690 ~ 38244475 (+) True G66861
TU83568 lncRNA downstream 413658 38275990 ~ 38276294 (+) True G66865
TU83593 lncRNA downstream 562380 38424712 ~ 38425252 (+) True G66887
AMCG00020944 mRNA upstream 120022 37712999 ~ 37717080 (+) True AMCG00020944
AMCG00020945 mRNA upstream 151606 37669962 ~ 37685496 (+) True AMCG00020945
AMCG00020941 mRNA upstream 207008 37629324 ~ 37630094 (+) True AMCG00020941
AMCG00020942 mRNA upstream 261246 37567036 ~ 37575856 (+) True AMCG00020942
AMCG00020931 mRNA upstream 610233 37203988 ~ 37226869 (+) True AMCG00020931
AMCG00020946 mRNA downstream 43939 37906271 ~ 37922454 (+) True AMCG00020946
AMCG00020951 mRNA downstream 168396 38030728 ~ 38031966 (+) True AMCG00020951
AMCG00020950 mRNA downstream 243680 38106012 ~ 38111899 (+) True AMCG00020950
AMCG00020954 mRNA downstream 254730 38117062 ~ 38137073 (+) True AMCG00020954
AMCG00020955 mRNA downstream 363914 38226246 ~ 38228104 (+) True AMCG00020955
TU83200 other upstream 919666 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 1580591 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 1928700 35867393 ~ 35908402 (+) True G66362
TU82915 other upstream 2086748 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 2672117 35163813 ~ 35164985 (+) True G66149
TU83857 other downstream 2458781 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 3189140 41051472 ~ 41052558 (+) True AMCG00021005
TU84094 other downstream 3735891 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 4190598 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 4563779 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile