RNA id: AMCG00021301


Basic Information

Item Value
RNA id AMCG00021301
length 2253
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00021301
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13930836 ~ 13938158 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGTTTCTACTGCTCAGTGAAGAAGGGCACTGTTTTGACGCCTGGACAATAGCATTTTTTACTATTGGCTGCCAGCTGGACATTCACTGCACACCAAGCAACACCATTGAACCAGTCAAACCATTATGTGAACTCATCACCATGAGCATCTCAAAGAGTTCGGGCAAATCCTTTTTTGTTCTCTCCCTATACCTCTGTCTCCTCTGCTCCCACCGACTGTGTGCAGCTCCTGATTTTTCAACATATCTCCAGAAGATTCTGCGGAACCACACAACTCATGCCTGTGATGGTGAGCAGCTGTCTGTCAGCTGTCCCTTTAAGACAGCCATCGCGGTATTGTCTGCGTTCTACGGCCGGCGAGTGCCAAGCGATCACCTGTGCCCGACCCCCAGAAACACAACCGGAGAGAGCACTGACTGCACAGCTGCTGTAGCTGTCCAGAAGGTTGTAGCTGAGTGTCAGGACCAGCGTTCCTGCCAGATACCAGTAAACAGCCGTGTGTTCGGACTGGACCCCTGTCCCAGCACCAGCAAGTACCTGATTGTTTCCTACAAGTGCAGACCAGAGAACCACCGCAGTAAGCTGGTGTGTGAGAATGAGCGTCTGCGGCTGGTGTGCAGGAACAACACCGTCTTGGCCATCTACTCTGCTACCTTTGGACACCTGCTGCATGGGAACCCTCTGTGTCCCGAGGAGGAGAGCTCAGCACCCGACATGGAGTGCCTGTCCCCCTCCGCCCTGAGAAAGGTGTCTCGCAGGTGTCACGGAAAAGCAAACTGCTCGGTGCTTGCTGACACACAGAGCTTTGGGGATCCCTGTTTCCCAGGAGTGAGGAAGCACCTGCGTGTCTCCTACACCTGCGTTCCAAAGAATCTCCTGGAGGAGCTGGGACAGGGGTCACCTgaccccttctctctctctgactacACACATGGAGGCTGGTACACCGGCCCAGGAGTGTCCAGGCTTCAGGCGAAGTTGATTTATACCAGCTCATTGGAAATCTATGCCCAAATCCGGGGACTTCCAGAGACAGTGGCCCTGTACTTTGTGTCTGGGATCTGTGCTGGCCTTGTCTTCCTCTTGTGCCTCTTTGGGCTGAAATCCACGTTGGTACGAGATGTCAAGAGCCTATGGTTGGAGCTAGGAGAAGAGCTCAAGTCCCAGAAGGCCGCAGCCGCCCAGCATGAGCTGATCGAGAACTTTGACGATGACACCTCCTCTGATTCCTCCTTCCGCCGCCTGACCCAGTCCTACCGTACAGCTAATGGCATCTTCAGCCCCGAGCTCACGGTGGAGATGGTGGAGAGGGACGAGGACAAGGAGATGCAGGACAGTGACATCTGGTTGCACAGGGACTCCAGCCCCTACGCCATCCATAAGATCAAAGCTTCCACCGCTTAGGGGCTGCCACTTActgccaaatacattttaatagaaaGATGATAATGAGAAATTATTGGGAAATCAAACTGAATTAAAGATAAGCTTTGGAACCTCAAATTCCACATACATGTACTGAAGCAAAGCATTCccattgtaaactttcttatattcttcttatgttctaagtgACATAAAGCAGCCATTAACTGTTGGGCTAGGAATTTAAGATGGgtagccattttatttttcaagctgtttttatttatttactgttaatgACTAAAAGCAcatcaatctttttaaaactggCTTTCCAGCAGTTTGATGGTATCATCCCTACCTTtcctttaattgttttctaaCAAAATCCAGGaagaaattcaaaataaaaggtGGGGATCTTGATGGTTgaactttgtgttgttttgtgttggttGTGTGTTTGGTGAATGTCAAATTCTGTAAACCTGAGAATAATTTTCAAGCGACAGGTAACACTAGTTATGTAACTAGTTATTTAATTCTGTTATTGGGATATCGCATCTTCATCTGCGTAGAAAAAAAGAATATTACACCTTTAACTACATTTAGAGTACAAATTGTACTTTTTACATAATCCTCGCCTCCTgaatgaacttttttttttttttttgtgcgaCTAgactaaaaaaaagaaacattttatcaGGATGTCTGGCTGCAATCCAGGAAAGTGTACATTTTTTCCATGTCCTTttcaaaaacacagaatatgatttttatatgagatttgctttacatttacaaccagctttatgtatattttaaaacctgctactgtgaaaacaacagaataaaaaactaaaaaaaatactgtaaattgATA

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106104 lncRNA downstream 555 13929842 ~ 13930281 (-) True G85044
TU106060 lncRNA downstream 68292 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA downstream 68364 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA downstream 68364 13860288 ~ 13862472 (-) False G85012
TU106057 lncRNA downstream 93763 13836587 ~ 13837073 (-) True G85009
TU106113 lncRNA upstream 10149 13948307 ~ 13949820 (-) True AMCG00021302
TU106124 lncRNA upstream 27778 13965936 ~ 13966910 (-) True G85058
TU106125 lncRNA upstream 29977 13968135 ~ 13968382 (-) True G85059
TU106161 lncRNA upstream 91532 14029690 ~ 14034000 (-) True G85089
TU106163 lncRNA upstream 96066 14034224 ~ 14036645 (-) True G85091
AMCG00021290 mRNA downstream 6244 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021284 mRNA downstream 34561 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021288 mRNA downstream 143579 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021285 mRNA downstream 159425 13755695 ~ 13771411 (-) True AMCG00021285
AMCG00021287 mRNA downstream 206188 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021302 mRNA upstream 10794 13948952 ~ 13951044 (-) False AMCG00021302
AMCG00021299 mRNA upstream 15893 13954051 ~ 13964211 (-) True AMCG00021299
AMCG00021300 mRNA upstream 62438 14000596 ~ 14013160 (-) True AMCG00021300
AMCG00021298 mRNA upstream 99075 14037233 ~ 14040889 (-) True AMCG00021298
AMCG00021303 mRNA upstream 107877 14046035 ~ 14047696 (-) True AMCG00021303
TU106093 other downstream 12968 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 303089 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1129250 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1403142 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7384259 6544492 ~ 6546577 (-) True G83864
TU106219 other upstream 111816 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2302846 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2708981 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2708981 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3360722 17298880 ~ 17303470 (-) False AMCG00021435

Expression Profile