RNA id: TU106213


Basic Information

Item Value
RNA id TU106213
length 848
lncRNA type read_through
GC content 0.49
exon number 5
gene id AMCG00021304
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14057918 ~ 14071325 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catttttgtttcttcaccGGGTCTCATTTTTATTGCACACATATGAAAATATGCAAAGTATCTGTACAATTAGATGTGTTCCACTGGAGATGGCATGTGTTCTTGGGGATTCCCAGGAGTCTGCGTAGAGAAGAACTGTGGTGGCTGATGTGAAGAAGCAAACTGCCGAGTTTACAAGCCCAGCTTGGTTCTCCTCCAGTGTCTCCTCTTGGAGTTGTACCGATCTTGTTGCCAGTCTTCATGCGGATCCACTGCGGGATGGGCCtgttctgcttctgcttcttaGCGAGGAAGCGCTTGATCCTGAAGGTCTTGtgtgatgactgcaacacagaCAGGGGGCCACCGTTAACCAACCCAGCCGAGTAGGAAGCGCCAATTCAGGCCCTCAGGTCAACACAACGTATACGGTTCTAGAAGTGACCCCGTAACCCGGAAGCAGTAGATGTGACCCTCAGGAGGACGGAAGGGACGGGGGCGAGAGTTGGGCTGAAGAGTGTTATCTTTCTGGAGAAAACCCCGGCACCCCAAGAGCACCCCACGATGTGGTATGAGATTATACCCGGGTTTGCAATCATGACCGCCTGTCTCATCGTTCCCGGTATTGCGACAGCACAGATCCACAAATGGACGAACGGGGGGAAGGAAAAGAGGATTGCACGGCATCCTTACCAATGGTACCTGATGGAGAGAGACAAGCGAGTGTCGGCGACCGGGAAGTATTATGAGTCAAAGGGTTTAGAAAACATTCACTGAAGACTCGGAACATCACGTCTGAATCTGAAAATCCTTTATTGTTCCTTCACCTCGCTGATTTGTTGTAtattaataaagttataaagATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106163 lncRNA downstream 21275 14034224 ~ 14036645 (-) True G85091
TU106161 lncRNA downstream 23920 14029690 ~ 14034000 (-) True G85089
TU106125 lncRNA downstream 89538 13968135 ~ 13968382 (-) True G85059
TU106124 lncRNA downstream 91010 13965936 ~ 13966910 (-) True G85058
TU106113 lncRNA downstream 108100 13948307 ~ 13949820 (-) True AMCG00021302
TU106403 lncRNA upstream 478386 14549592 ~ 14554392 (-) True G85251
TU106493 lncRNA upstream 969857 15041063 ~ 15043903 (-) True G85332
TU106657 lncRNA upstream 1247892 15319098 ~ 15378748 (-) True G85456
TU106676 lncRNA upstream 1310146 15381352 ~ 15383931 (-) True G85471
TU106674 lncRNA upstream 1359836 15431042 ~ 15432371 (-) True G85470
AMCG00021303 mRNA downstream 10224 14046035 ~ 14047696 (-) True AMCG00021303
AMCG00021298 mRNA downstream 17031 14037233 ~ 14040889 (-) True AMCG00021298
AMCG00021300 mRNA downstream 44760 14000596 ~ 14013160 (-) True AMCG00021300
AMCG00021299 mRNA downstream 93709 13954051 ~ 13964211 (-) True AMCG00021299
AMCG00021302 mRNA downstream 106876 13948952 ~ 13951044 (-) False AMCG00021302
AMCG00021309 mRNA upstream 3012 14074218 ~ 14075345 (-) True AMCG00021309
AMCG00021310 mRNA upstream 5059 14076265 ~ 14106859 (-) True AMCG00021310
AMCG00021308 mRNA upstream 46882 14118088 ~ 14124529 (-) True AMCG00021308
AMCG00021307 mRNA upstream 54448 14125654 ~ 14137967 (-) True AMCG00021307
AMCG00021316 mRNA upstream 76714 14147920 ~ 14167490 (-) True AMCG00021316
TU106219 other downstream 6023 14049974 ~ 14051897 (-) True G85115
TU106093 other downstream 140052 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 430173 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1256334 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1530226 12527093 ~ 12527694 (-) True G84814
TU106928 other upstream 2169798 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2575933 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2575933 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3227674 17298880 ~ 17303470 (-) False AMCG00021435
TU107289 other upstream 3348398 17419604 ~ 17423418 (-) True G85953

Expression Profile