RNA id: AMCG00021549


Basic Information

Item Value
RNA id AMCG00021549
length 2208
RNA type mRNA
GC content 0.59
exon number 20
gene id AMCG00021549
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20983600 ~ 21020401 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGCGAAGACCAGGGTTGTAATTGTGCGGCTGGAGAAGAGGGAGGAGCGCACATGTCCTCCTCCAGCCCGGGGACGGGGACGTggacggggacggggacgggATGCCGTCCCGGTGGTTTTACCCAAGAGAGCTGACCCAGCTGAGCTGAAGTCGATTTTCCTAAAGTATGCAAGCATTCAGAAGAACGGGGACCACTTCATGTGTCCCGAAGACTTCGTCTCTCGGTTCCTGCTCGCGCACACGGGCATCCGGCTGACGGAGAAGTCGGTGGAGCTCCTGGCTGGAGTTGTGGACCAGACAAAGGATGGgATGATTTCCTTCCAGGAGTTCCTGGCCTTCGAGTCGGTTCTGTGCGCGCCGGACGCCCTTTTTCTGGTGGCTTTCCAGCTGTTCGACAAGACCGGCACGGGGGAGACCACTTTTGAGGATGTCAAGCAGGTTTTCAGCCAGACCACGATTCATCAGCACATTCCCTTCAACTGGAATTCGGAGTTTATACAGCTGCATTTTGGCAAGGACCGCAAGAAGCGCCTGACATACGCGGAGTTCACGCAGTTTCTCCTGGAGATGCAGCTCGAACATGCCAGGCAGGCGTTCGTGCAGCGGGACCGAGCCAAGACTGGCACCATCACGGCGCTGGACTTCAACGACATTATGGTCACCATTCGACCGCACATATTGACGCCGTTTGTAGAAGAATGTCTCGTCGCTGCGGCCGGTGGAGCCACTTCGCACCAGGTCAGCTTCTCCTACTTCAATGGGTTCAATTCTCTGCTCAACAACATGGAGCTCATTAGGAAGATCTACACCACTCTGGCGGGCAGCAGGAGAGACGTGGAAGTCACTAAAGAGGAGTTTATTCTGGCGGCCCAGAGGTTTGGCCAAGTCACCCCCATGGAGGTGGACATCCTGTTCCAGCTGGCGGACCTGTCGGAGCCACGGGGGCGGGTCGGATTAGCAGACATCGAGCGAGTCGCACCGCTGGAGGAAGGGGCTCTCCCGTACAACCTGGCCGAGGCTCAGAGACAGttttcttccccggtccttctctctccccagcAGTCCTCCGGTGACCTGTCTCGGCCCGTACTCGTCCAGCTAGCGGAGTCTGCCTACAGGTTCTCTCTTGGCTCGCTGGCTGGAGCGGTCGGTGCCACCGCGGTGTACCCCATCGACCTGGTGAAGACCCGCATGCAGAACCAGCGCGCCAGCGGCTCCTTGGTGGGGGAGCTGATGTACAAGAGCAGCTTTGACTGCTTCCGCAAGGTCCTGCGCTACGAGGGCTTCTTCGGCCTGTACAGAGGTCTCCTGCCGCAGCTGCTGGGTGTGGCCCCAGAGAAGGCCATAAAACTCACAGTGAATGACTTTGTGAGAGGGAAGTGTATGCAGAAGGATGGCTCTGTCCCCCGTCTGGCGGAGGTGCTCTCCGGGGCGTGCGTCCTCATAGAACCGATCGATGTGTCATTTACGCTGCGTCGGCCATGTTCGAATCTCAGACAGGTGGAGAAGCGTCAGTCAGTGTGTAAAAGTGCCGGAGCCTCCCAAGTGGTCTTCACAAACCCCCTGGAGATCGTGAAGATCCGACTGCAGGTGGCAGGAGAGATCACGACGGGCCCCCGGGTCAGCGCGCTGTCGGTCATCAGGGACCTGGGTTTCTTCGGCCTCTATAAGTGTTGTGGTTTTGTTCCCTGGCAAGGGCTTCTGTTGCCTCATTTTGCAAACATGAGAAGTGTAAATGGTTACAATAATCACCCCTCTCTCCATGACCCTCCAGGTATGCCCGCAGCCTCCTTAGTGACACCGGCTGATGTTATCAAGACACGGCTACAAGTGGCGGCTCGTGCCGGCCAGACGACGTACAATGGGGTCATTGACTGCTTCTGGAAGATCCTGAGAGAGGAGGGACCCCGCGCCTTCTGGAAGGGAGCAGGAGCACGAGTCTGCAGGTCGTCCCCCCAGTTCGGCGTCACTCTCCTGACCTACGAGCTCCTCCAGAGATGGTTCTATATTGACTTCGGAGGACAGAAACCCACCGGCGCTGAACCCCGGCCCATGTCTCGGATCAGCCTGCCGGCACCCAACCCGGACCACACGGGGGGGTTCAAGCTGGCTCTGGCCACCTTCGCGGGGGTCGAGAGTAAATTCGGACTTCAGTTGCCGCGGTTCAGTGCAGGGGTCCACGTGTCTCCGGCGTCGCCCTGA

Function

GO: NA

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108259 lncRNA downstream 129306 20825630 ~ 20854294 (-) False G86739
TU108260 lncRNA downstream 152678 20828259 ~ 20830922 (-) True G86740
TU108257 lncRNA downstream 156303 20824022 ~ 20827297 (-) True G86739
TU108256 lncRNA downstream 159636 20823000 ~ 20823964 (-) True G86738
TU108253 lncRNA downstream 160997 20821632 ~ 20822603 (-) True G86736
TU108398 lncRNA upstream 155305 21175706 ~ 21184318 (-) True G86848
TU108400 lncRNA upstream 166367 21186768 ~ 21188838 (-) True G86849
TU108401 lncRNA upstream 169438 21189839 ~ 21190932 (-) True G86850
TU108442 lncRNA upstream 270972 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 495631 21516032 ~ 21516234 (-) True G86893
AMCG00021546 mRNA downstream 56885 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021545 mRNA downstream 80835 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021538 mRNA downstream 127826 20843663 ~ 20855774 (-) True AMCG00021538
AMCG00021534 mRNA downstream 258778 20722370 ~ 20724822 (-) False AMCG00021534
AMCG00021533 mRNA downstream 290376 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021548 mRNA upstream 14462 21034863 ~ 21038425 (-) True AMCG00021548
AMCG00021552 mRNA upstream 66474 21086875 ~ 21094522 (-) True AMCG00021552
AMCG00021553 mRNA upstream 89353 21109754 ~ 21140683 (-) True AMCG00021553
AMCG00021554 mRNA upstream 146180 21166581 ~ 21175350 (-) True AMCG00021554
AMCG00021557 mRNA upstream 175194 21195595 ~ 21205945 (-) True AMCG00021557
TU108218 other downstream 258720 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 585817 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 623345 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 648296 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1514867 19466060 ~ 19468733 (-) False AMCG00021495
TU108350 other upstream 43457 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2134786 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2317850 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4383249 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4885043 25905444 ~ 25908005 (-) True G87806

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029533 False 1992 mRNA 0.52 22 NC_007130.7 41290713 ~ 41371990 (-)
grasscarp (Ctenopharyngodon idella) CI01029807_00003199_00006276.mRNA True 411 mRNA 0.50 3 CI01029807 3097 ~ 6276 (-)