RNA id: AMCG00021553


Basic Information

Item Value
RNA id AMCG00021553
length 1173
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00021553
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21109754 ~ 21140683 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTGCGCTGGTGCTGAGTGTTACACACAGCTTAGCATTCCTGCGTCGATGGTACATCTGGAGTTGGCTGTTGCGGATGCTTTGCGAGGGCAGAAACCAGTGAACGTGTCGTTCCAAAGGACGCCGTCTCCGAACTTCTTCTTTGGCATTGACCAGGATGGGAAGCTTGCAGAGATGGGCTGGTTTCTTTACCCCACTTTTAAGTTCCTTGTTTGGCAGACGCAGTGGTTCGATTATGCTCAGCAGTTACACGGTCAGCTCCAGAAGCCATCTCAGACCATCAATGTGTTCAACCACACGCTGATGCAAGGGGATCGTGGGGCGGTCGCTACCGTGGGACTTCCAGAAGACTTATTCTCCTTCGATGTTTTTCAACTGGACACGTCTCTGTCGTGCCCGGACCCGTGGGACGAGAGCTGCGCGCCCTGGGACCACACCGTGCAGCTGTTCGTGTGCTGCGATCGCCAGGGCCCCCTCTGTGGCCTGGAGTTGGGCCGCTGGATCACCGCCTTCCGCAGAGGCATCGGCCGCTGGCTGACGGATGCGTCTCCCTTACTGGCTCTCCTTGATGGCGGTGTCTGCACCTTCACCATGAAAACCGTCCCGTGGGCGAAGCCTTGGATCACATCGCTCAACCTTCGATTTAGTAAAAGCAACCAGTCCATTTCAGGGAAACAATCTGAGGCACTTCAGCCATTTCTGCTGCAGCCGCTGTTTAACGGAGGGACATTTGACAAGAACTATAATAAGGGATACAAGCCCATCAACTTCACCGTGCCAGCATCGACAAGAAAAGTGGAAATCTACGCCGTCATCACCGGCCACGGGAGCGACGACCAGGGATGCTGCGAGTTCTGTGTGACATCTCATCACTTCGTGGTTAACGACAAATTCAATCACTCCATGGTGTTTGATGAAGCAGGTACTGCGTTTGGGTGCGCTGATCACGTGACCGAAGGAGTGGTGCCCAACGAACATGGCACCTGGCTGTACGGACGCGGGGGCTGGTGCGACGGACAGCAGGTCACCCCCTGGAGGACAGACATCACCAGTCAGctggATATGACTGGATCCAACACAGTCCTCTATTTTGGTCTGTACAACGGGAGGGACCCCAACCCTACAAGCAACCCTGGTTATATTATAATGTACTCCTATGTTGTCTTCTTC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108259 lncRNA downstream 255460 20825630 ~ 20854294 (-) False G86739
TU108260 lncRNA downstream 278832 20828259 ~ 20830922 (-) True G86740
TU108257 lncRNA downstream 282457 20824022 ~ 20827297 (-) True G86739
TU108256 lncRNA downstream 285790 20823000 ~ 20823964 (-) True G86738
TU108253 lncRNA downstream 287151 20821632 ~ 20822603 (-) True G86736
TU108398 lncRNA upstream 35023 21175706 ~ 21184318 (-) True G86848
TU108400 lncRNA upstream 46085 21186768 ~ 21188838 (-) True G86849
TU108401 lncRNA upstream 49156 21189839 ~ 21190932 (-) True G86850
TU108442 lncRNA upstream 150690 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 375349 21516032 ~ 21516234 (-) True G86893
AMCG00021552 mRNA downstream 15232 21086875 ~ 21094522 (-) True AMCG00021552
AMCG00021548 mRNA downstream 71329 21034863 ~ 21038425 (-) True AMCG00021548
AMCG00021549 mRNA downstream 89353 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021546 mRNA downstream 183039 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021545 mRNA downstream 206989 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021554 mRNA upstream 25898 21166581 ~ 21175350 (-) True AMCG00021554
AMCG00021557 mRNA upstream 54912 21195595 ~ 21205945 (-) True AMCG00021557
AMCG00021562 mRNA upstream 67013 21207696 ~ 21227807 (-) True AMCG00021562
AMCG00021559 mRNA upstream 92248 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021558 mRNA upstream 98391 21239074 ~ 21241091 (-) True AMCG00021558
TU108350 other downstream 26184 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 384874 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 711971 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 749499 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 774450 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 2014504 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2197568 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4262967 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4764761 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4950571 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile