RNA id: AMCG00021557


Basic Information

Item Value
RNA id AMCG00021557
length 2621
RNA type mRNA
GC content 0.53
exon number 18
gene id AMCG00021557
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21195595 ~ 21205945 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATTCAATCTCCACAGGGGAATCAGGGTTTTCCTGGAGAAACAGGCCCGACGGGGGACAGAGGCGTTGGGGAACCAGGAGCTAAAGGCGACCCGGGACCTCCAGGGACTGCGGGGATCCCTGGTATTCCCGGGGAGGACGGCACCGTGGGGGCGAAGGGAGACAAAGGGGACAGGGGGCCAAGGGGGCTGTCGGGCGCTCAGGGACTGGTTGGACCGGCTGGGCCGAAGGGAGAGCCTGGGACTCCTGGACAAACGGGAATGCCTGGGTCCCCTGGGAGAGGACACCCCGGAGCCAAGGGGGACTCTGGCCCAAGCGGTCCAGCTGGGCCTGGAGAGAGAGGATTGCCGGGGCCCACTGGACCAGCTGGACCTAAAGGAGATGGTTTCGTTGGCCCTCCGGGACCTGCTGGATTACCAGGGCTACCAGGAGAAATGGGCCCGGAAGGGAAGGGATTGCCCGGACCAAAGgGAGATCGTGGCTCCTCAGGGCCTCCAGGACCCACCGGACCTCCAGGCAACGGACAGATGGGACCCAAGGGTTCTGTTGGCCAACCAGGTCCATCCGGCCCACAGGGCTTCCCTGGAGAAGGCAACCAAGGGCCAAAGGGGGAACCAGGATTCCAGGGAGTTCCTGGCCCCAGGGGTCCTCCTGGAGAAGGACTGCTTGGAGAAAAGGGTGACCGTGGGTTTGCAGGAGACCGTGGGAAGAAGGGAGACAAAGGAGAGCTGGGGGAGTCTGGAGCACCAGGAGTCTCAGGGAGAGATGGACAGAAAGGGGAACCAGAAagaagaaattattaaaataatcagagCTATCTGCGGTTGCGGGGTGAAGTGCAGAGAGAGTCCTCTGGAGCTCGTCTTTGTGATCGACAGCTCGGAAAGCGTTGGCCCAGAAAACTTCGACGTGGTCAAGGACTTTGTCAATGCACTGATAGACAGGGTCTCCGTCAGCCGGGAAGCCACCCGCATCGGCGTGGTCCTCTACAGCCACATCAACGTGGTGGTAGTCAGCCTGCAGCAGCCGTCGAACCAGGCAGACGTAAAGGCGGCAGTCCGCAAGATGACCTACCTGGGCGAGGGCACGTACACGGGCAGCGCCATCAAGATGACCAATCAGATCTTCCAGGTGTCCAGGCCAGGGGTGAGGAAAGTGGCGATCGTCATCACGGACGGGCAGGCGGACAAGCGCGACTCGGTGAGGCTGGAGACGGCGGTGAGGGAAGCCCACGCCACCAATATCGAGATGTTCGTGATCGGAGTCGTGAACCGCAGCGACCCCTTCTATCTAGAGTTCAAGGACGAGATGAACGTCATCGCCTCCGATCCCGACGAGGAGCACGTCTACCTGATTGACGACTTCATGACACTCCCGGCTCTGGAAAGCAAGCTGTTGAGCCGGATCTGTGAGAATGAGGACGGCGCTCTGATCAACTCCATCCCCAGCTCTGCTCTGCCACCGGGCAGCACCAACACTTCGGAGCAGAATCGAGAGAAGCCAGACCGGACGGACACGCCTATTACTGACGTCTACACACCTGGACCCCCAGGGAGGACAGAGATTTACTCTTCTTTGGAGGACCCCCTAATTAATTACATAAGCAAAACACCTTCCAGAGGGGACTCCAGAATAGAAGTCGATGCTCCTCCATTTGACAGAGCAAAACTGGAGACCCCCACAGCCTCTGCCGCTGGTCCCGATGCGCCGACGCGGAGACCGTTCTCACCGGAGACTGCCCGGCCCACACCCCCGGCCTCCCCACCTCTGGTGCAGGAGACATTCAGTGCAGacGGAGGATGCCAGGACACGCTAGACCCAGGGCCGTGCAGAAAGTACGAGGTTAAATGGTACTATGACACCACAGCCAACGCGTGCGCCCAGTTTTGGTATGGGGGCTGCCAAGGCAATGGGAACCGATATGACACTGAAGACATCTGCAGGACGGCGTGTTTGAGAACCTGAAAGagaTGAAGTAACTGGAAGAAACTCCAGCCCTTCTCAATGCAAGAGGCCTCCATCATCTGAGTGATACACGCTTATATATACACCACTTGTTGATCTGTGTTAAGAAGTTGTAAAAACTGgaatgcaatatttaaaatgataggGCATCCCATCATCATTACAATACAGAAGCGGTCTAGTTTGTATGTACTCAGTATTATATGAAACGTTtacaatgaaatattttttttaacctgaagtatgaagaagaaaataaccaCTGTGGATATTAATCAAGAATGCACATTGTTCAAGTTTGCTAAATTGAGTGAAAaccacttttaaaaatgttttgatcatACATGTAGGTTTACATGTAATCAATAACCACCATTATTCATTCAGTTTGAAAGGCAAGATTGGCACAATATCATCATTTTAATGAGCAGGGAGACCGGCCTTGCCACCCTcacacaatcaaataaattCACCTTCCATGAAGATAtatccaatttaaaaaaacaaaggctACTAACTATTTCATATAATGgatagtttaaaatgtttcatacaaataaatgttacagAAGTGACTCTTTGGGATGTTGTTGCTCatttataaaactttattttatggAGTGCTTGgtagtttactttttaaaagagaaaaa

Function

GO: NA

KEGG:

id description
K23619 COL28A; collagen type XXVIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108401 lncRNA downstream 4663 21189839 ~ 21190932 (-) True G86850
TU108400 lncRNA downstream 6757 21186768 ~ 21188838 (-) True G86849
TU108398 lncRNA downstream 11277 21175706 ~ 21184318 (-) True G86848
TU108259 lncRNA downstream 341301 20825630 ~ 20854294 (-) False G86739
TU108260 lncRNA downstream 364673 20828259 ~ 20830922 (-) True G86740
TU108442 lncRNA upstream 85428 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 310087 21516032 ~ 21516234 (-) True G86893
TU108475 lncRNA upstream 460457 21666402 ~ 21671315 (-) True AMCG00021569
TU108491 lncRNA upstream 578931 21784876 ~ 21785134 (-) True G86925
TU108574 lncRNA upstream 924861 22130806 ~ 22188140 (-) True G86997
AMCG00021554 mRNA downstream 20245 21166581 ~ 21175350 (-) True AMCG00021554
AMCG00021553 mRNA downstream 54912 21109754 ~ 21140683 (-) True AMCG00021553
AMCG00021552 mRNA downstream 101073 21086875 ~ 21094522 (-) True AMCG00021552
AMCG00021548 mRNA downstream 157170 21034863 ~ 21038425 (-) True AMCG00021548
AMCG00021549 mRNA downstream 175194 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021562 mRNA upstream 1751 21207696 ~ 21227807 (-) True AMCG00021562
AMCG00021559 mRNA upstream 26986 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021558 mRNA upstream 33129 21239074 ~ 21241091 (-) True AMCG00021558
AMCG00021564 mRNA upstream 89652 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021569 mRNA upstream 462983 21668928 ~ 21670140 (-) False AMCG00021569
TU108350 other downstream 112025 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 470715 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 797812 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 835340 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 860291 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1949242 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2132306 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4197705 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4699499 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4885309 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile