RNA id: TCONS_00009488


Basic Information

Item Value
RNA id TCONS_00009488
length 759
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_004802
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30046320 ~ 30220346 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGGAACTGAAGGGGGAATATAGGAGTACAAGAGGGTGTAAAAGAGATTTTACCCACTAGTTTGCAGGGCTGGGGTGCCACACGAGCAGCCTGCCAGAGGCAGGAGACAAGCACTATCATCCAAGCTGTGCAAGATGCAGCAGGTGCAATCAGATGTTCACGGAGGGAGAGGAGATGTACCTACAGGgtTCAACAGTATGGCATCCAGACTGTAAGAACAACAGTAGAGTGGAAGAGAAGTACAGACCCACGAGGTCTTCGTCTGAGAGCATCTGTTCGAGACCTGGTTCCAGCATCCCTGGATCTCCAGGTCACACCATCTATGCAAAAGTAGACAATGAGATTATTGATTACAAGGACCTAGCAGCCATTCCCAGAGTCAAGGCCATTTATGACATAGAGCGTCCAGACATGATATCCTATGAGTCTCTCCATTCCACCTCCTCCACCCTGGAAAGACAAGGAAGGCACAGCCCTGGAGAGCCTGTCAGAGCCTCAGGTGGCAGTCCTACCAGAGGCAGAGCCACAACCCTGCCACAAGACCCCTCCTCATTGTCAGCAGAAACATCTCCAAGGACACTGTCTCCCACCCCATCTGCTGAGGGTTGCTATGACATGAGGGAGCGAATAATACAAAGATCCACCAGCCAGGGCTCCATTGGCTCTCCAGTCTATCACCGCCATAACTACATACCACCTCTATCCAAGTCACCCCAGCACTTCCACAGACCAGACCAAGGCATTAACATGTATAGAA

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0060271 cilium assembly biological_process
GO:0001725 stress fiber cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-91 Predicted to enable actin filament binding activity. Predicted to be involved in cilium assembly and lamellipodium assembly. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in stress fiber. Orthologous to human ABLIM1 (actin binding LIM protein 1).

Ensembl:

ensembl_id ENSDART00000142756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010745 lncRNA upstream 794928 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA upstream 794928 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00009458 lncRNA upstream 1222192 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00010946 lncRNA upstream 1222192 28942234 ~ 28946150 (+) False XLOC_004786
TCONS_00010744 lncRNA upstream 1550377 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00009492 lncRNA downstream 2627 30207466 ~ 30209133 (+) True XLOC_004802
TCONS_00009497 lncRNA downstream 155740 30360579 ~ 30363549 (+) False XLOC_004804
TCONS_00009502 lncRNA downstream 224994 30429833 ~ 30432964 (+) False XLOC_004806
TCONS_00009503 lncRNA downstream 225021 30429860 ~ 30432964 (+) False XLOC_004806
TCONS_00009504 lncRNA downstream 225803 30430642 ~ 30432628 (+) False XLOC_004806
TCONS_00009484 mRNA upstream 39030 30046375 ~ 30129312 (+) False XLOC_004802
TCONS_00009478 mRNA upstream 350133 29763546 ~ 29818209 (+) False XLOC_004798
TCONS_00009474 mRNA upstream 897980 29240124 ~ 29270362 (+) False XLOC_004795
TCONS_00009475 mRNA upstream 916878 29240183 ~ 29251464 (+) True XLOC_004795
TCONS_00009473 mRNA upstream 930527 29236274 ~ 29237815 (+) True XLOC_004794
TCONS_00009493 mRNA downstream 29138 30233977 ~ 30307747 (+) False XLOC_004803
TCONS_00009494 mRNA downstream 29370 30234209 ~ 30308351 (+) False XLOC_004803
TCONS_00009495 mRNA downstream 60963 30265802 ~ 30306215 (+) True XLOC_004803
TCONS_00009496 mRNA downstream 155345 30360184 ~ 30367008 (+) False XLOC_004804
TCONS_00009498 mRNA downstream 155740 30360579 ~ 30366620 (+) True XLOC_004804
TCONS_00009482 other upstream 197713 29970513 ~ 29970629 (+) True XLOC_004801
TCONS_00009481 other upstream 208288 29959940 ~ 29960054 (+) True XLOC_004800
TCONS_00009480 other upstream 356382 29811844 ~ 29811960 (+) True XLOC_004799
TCONS_00009479 other upstream 401082 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009477 other upstream 736151 29432075 ~ 29432191 (+) True XLOC_004797
TCONS_00009491 other downstream 2374 30207213 ~ 30211446 (+) False XLOC_004802
TCONS_00009507 other downstream 304444 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009521 other downstream 521585 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009526 other downstream 990987 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009527 other downstream 1003597 31208436 ~ 31208551 (+) True XLOC_004822

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1893436 True 825 TUCP 0.48 6 NC_048584.1 3628495 ~ 3681793 (-)