RNA id: XM_043243049.1


Basic Information

Item Value
RNA id XM_043243049.1
length 3722
RNA type mRNA
GC content 0.44
exon number 21
gene id acsl1a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10341828 ~ 10361688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCGGGTTTCCTATCTGAAGACAGCGGGGAGAGTCACACACGCCTCCAAATAACAGCTGTGTGGACGCTACAGTAACACCGTTCAGacctGGGCAAGCTACATTTTAGAGAGCCATGCAGGCCCAGGATCTGATCCGGCACCTGCGGATGCCTGAGCTGGACGACTTGAGGCAGTATGTGCGCAGTTTACCCACCAACACCCTCATGGGCATGGGGGCTTTCGCTGCCATCACCACGTACTGGCTGGCCACTCGCCCTAAAGCCCTAAAACCACCCTGCGACCTCGACATGCAGTCCGTGGAGGTACAGggtgGTGGATATGCTCGTCGGTCTATTCTACAGGACAGCGACACATTCATGACATACTACTACAAAGACGCTCAGACGATGTATGAGTTTTTCCTACGAGGGCTACGAGTGTCAAATAACGGTCCTTGTTTGGGATCACGTAAACCGGGCAAGCCGTATAAATGGCTTTCATATAAAGAGGTAGCAGACAGGGCAGAGTTCGCAGGTTCAGCGTTACTCCACAGAGGTCACAGTCAAACAGGAAACAAATACATTGGCATCTTTGCCCAGAACAGACCAGAGTGGACGATTTCAGAGCTGGCATGTTACACATATTCACTGGTGGCTGTGCCGCTGTATGATACACTTGGTACAGAGGCCATCAGTTACATCATTGACAAAGCCACCATCTCCACTGTGATCTGTGACATCGTGGATAAGGCTCGTCTGATCCTGGAGTGCGTGTCTGGCCGGAAACACAGCATCACAACCATAGTGATCATGGAGAGCTTTGACAGTGAACTGACAGCACGAGCACAACAGACAGGCATTGAGATCCTGAGCCTCAAGGAGCTGGAGGCTATTGGCAAAGCAAACTATAAGACACCTATTCCACCTAAACCAGAGGACCTGGCACTGATTTGCTTTACGAGTGGAACTACAGGAAGTCCAAAGGGAGCAATGCTCACACATGGAAACGTTGTTTCCAATTGTTCTGCCTTCATTAAAGTTACAGAGgttCACTGCATGCTCAACCAGACAGACATTCACATATCTTACCTCCCGCTAGCACACATGTTTGAGAGAGTGGTCGAGGGTGTGCTTCTGGTCCACGGGGCCAGGATTGGATATTTTCAGGGTGATATCCGTCTGTTGATGGATGATTTAAAGACTCTTAAGCCCACTATATTCCCTGTAGTGCCCAGACTACTCAACCGTATGTTTGATAAGATCTTCGGACAGGCAAACACTCCTCTCAAAAGATGGCTTCTGGATTTTGCCACCAGCAGAAAAGAGGCGGAGCTTAAAAGTGGAGTTGTGAGGAAGGACAGCATGTGGGATAAACTGATCTTCAGCAAAGTGCAGGCCAGTCTGGGTGGACGCGTGAGGCTTATGATCACAGGAGCCGCTCCGGTCTCTCCCACCGTCCTCACCTTCCTCAGAGCAGCGCTGGGCTGCCAGttttatgagGGCTATGGGCAGACAGAGTGTACCGCGGGCTGCACCATGTCACTTCCTGGAGACTGGACAGCAGGTCATGTGGGAGCACCACTTCCCTGTAACTTCGTCAGACTTGTGGATGTGGCTGAGATGAATTACTTTGCAGCAAATGGAGAAGGAGAGGTGTGTGTGAAAGGACCAAATGTGTTTCAAGGTTATCTGAAGGACTCAGAGCGAACCTCAGAAGCCATAGATAAAGACGGCTGGCTGCACACTGGAGATGTAGGCAAATGGCTTCCGAACGGGACTCTGAAGATTATAGACAGGAAGAAACACATCTTTAAGCTGGCCCAGGGTGAATACATCGCTCCAGAGAAGATTGAGAACATCTACATCCGCAGTGACCCTGTGGCTCAGGTCTTTGTACATGGAGACAGTCTGCAGGCTTGTTTAGTGGGTGTTGTGGTGCCTGATCCAGATTTTCTGCCTGGATGGGCGAAGAAAAGAGGCATCGAGGGCTCCTATACCGAAATGTGCAAAAGCAGGgAACTGAAAAATGCTATCCTGGAAGACATCATTCGGCTAGGGAAAGAATCTGGACTGAAGTCTTTTGAACAGgtgagaGACATTGCTCTGCACATGGAAATGTTTTCTGTTCAGAATGGACTTCTCACGCCAACATTGAAAGCAAAGAGAACCGAGCTGAGAAACCACTTCAGACAGCAGATAGACCAGCTCTATGCTAAAATCAAAATGtgaacaaacagagagagagagagagagagagagagagagacccctACACTGAAAGTGTAGTGATGACAATGAAGGATGTGTTCTAGTTCTGTCGTGTCGTTGTATCACGGGGGAAGAGAAGGACCATTGTACCTAGTTCTTTTATCATTTCTACCACTTGGATGTGCCACAGTCATCTCAAAGAGGTGAAGTACAGTCCTGCCAGCAAAATACATACCAAACATTTCATAAgcccaattaaaaaaaaaaaaaaactggaagtGAACCACCCAATGCCTTAGGCCAGTGAATGCCTTGAATCTAATAACTGAGAGCATACCTGCAAGATCACGTAAAACAGAACAGACTGAGACAGCCGGCATTCATGTTTGGGATTTGTAAACTATGTGCAGATATTTTCaacaaaacttatttaaaattatagtgATTTCCATTAAACTTCTGTAAATGAAAACGTATCAGtgtttactatttaaatttatGCTCTTAATTGTAAGTTACTGCACTTTTATGGTAAATCATGTGTTTCAAATATTTGAGGTCTTTTCCATatctattatataaatgatttctaCTGAAACGGAGAATAAAATGACATTGGTTCACGCCAATTAGTCCTCACTGATACTCAGATACTCTCTCTCCTGGGACCCTATTTGTAAAGTGTGTTCGCACAGATTTGATTTTAGTATGTTTAAAACCGCTATTGTACATTTTGACGATTGGGGATATCTTAAATCTTAAAGGGTTAGATCACTCAAAAATTAAACTTAGGCTGTGTTTTCCTTATTTTCAAAGCGTCCTTTGTATACATGACTtccttctttcagacgaatccaatcggaattacattaaaaaccGAAGACCCCTGCAGACCCCTCCAAGCCTTTCAATGGGTGTTTGCTCTACACACTTCTGaagacttgaaataaaatatgcacatcCAAACCCCAAGGTTAAACGAAGTAGCGaatccatgtgtttttgtaagataaatcACTTGAGCTTTATTTGAgtgttttggactgttaaagAGAAACATCTGCCCTCTTCAAAGAAGTGCAAGGACCATTTTTGATACGTTGACTCCGATTGGATTCATCTagaagaacataaaaaaaaaaaaaaaacctatgaTGCTTCGAAGGTGAGTAAAACagcctaattttaattttttgggtgaactaaccctttaatgaaATTCATTAGGAGAGGTTTACATAGCATTCACGATCATTTTCAAGTCGTAGATTTTACATCTATAAGAGAGGCGTACATGTTTTCTGTTCATTCATTCTATGAAtcaaatgtacacacatttAAGTGTTAATCATGAGATCGATTTTAAGACGGTTTCtgtgcaacattttataaacgaGGCCCCTGGAGATTAAATATATAGGTTctctatttatatttgtacatcTTTATTCTATTCTGGCTTGTGTAAATTGTGCAGTTATTTGTTGCATGTGGACGTTGAGGAGAGAAATAAACTGATGGCATTGTCTTTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3314 lncRNA downstream 34113 10307504 ~ 10307715 (-) True G2293
TU3313 lncRNA downstream 34590 10306970 ~ 10307238 (-) True G2292
TU3305 lncRNA downstream 84941 10256650 ~ 10256887 (-) True G2286
TU3145 lncRNA downstream 549361 9787314 ~ 9792467 (-) True G2174
TU3099 lncRNA downstream 648390 9679896 ~ 9693438 (-) True G2138
TU3330 lncRNA upstream 37626 10399314 ~ 10401686 (-) False G2302
TU3336 lncRNA upstream 37626 10399314 ~ 10401686 (-) False G2302
TU3381 lncRNA upstream 316487 10678175 ~ 10678522 (-) True G2327
TU3382 lncRNA upstream 317122 10678810 ~ 10679017 (-) True G2328
TU3454 lncRNA upstream 463107 10824795 ~ 10825752 (-) True G2369
XM_043246382.1 mRNA downstream 443473 9893021 ~ 9898355 (-) True frg1
XM_043246295.1 mRNA downstream 443474 9893889 ~ 9898354 (-) False frg1
XM_043246195.1 mRNA downstream 448771 9888744 ~ 9893057 (-) True asah1b
XM_043241137.1 mRNA downstream 520727 9806314 ~ 9821101 (-) True mtmr7b
XM_043241148.1 mRNA downstream 520727 9808510 ~ 9821101 (-) False mtmr7b
XM_043243046.1 mRNA upstream 11236 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243045.1 mRNA upstream 11236 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243044.1 mRNA upstream 11236 10372924 ~ 10398831 (-) True si:ch211-197n1.2
XM_043243082.1 mRNA upstream 40853 10402541 ~ 10408372 (-) False cfap97
XM_043243071.1 mRNA upstream 40853 10402541 ~ 10408363 (-) False cfap97
TU2978 other downstream 1543473 8795071 ~ 8798355 (-) False LOC122351550
TU2970 other downstream 1559241 8779218 ~ 8782587 (-) False LOC122351550
TU2800 other downstream 1734033 8603300 ~ 8607795 (-) True G1926
XR_006250550.1 other downstream 3046149 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 3046195 7205584 ~ 7295633 (-) False dmd
TU3335 other upstream 37499 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 380234 10741922 ~ 10745896 (-) False LOC122347930
TU3398 other upstream 395883 10757571 ~ 10760491 (-) False LOC122347930
XR_006251247.1 other upstream 448622 10810310 ~ 10814075 (-) False LOC122347618
TU3478 other upstream 592187 10953875 ~ 10981366 (-) True G2382

Expression Profile