G2292 (fat1,fat1a,LOC107562748)


Basic Information

Item Value
gene id G2292
gene name fat1,fat1a,LOC107562748
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10306970 ~ 10307238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3313
AGTATATGTTGGTGCATGGTTTCATGGTCTAGTCTCTCTGCAGTGTACAACACCCCAGTTCCAGGATCTAGTCTGAACTTGCGTAGACTGAATGGGTCAGTGCTACTGAGGAGGGTGTAGGTTAACTTGTTCTTCTCATCCTGGTCTGAAGCTGTAATCCGTAACACCTCTGTGTCAGGTGGGGTATCTTCAGCGACATTCACTTCATACTTAGACTTAGAGAACTCTGGCCGATGATTGTTGGTGTCAATCACTTTAATAAGAacctg

Function

symbol description
fat1a Predicted to enable calcium ion binding activity. Acts upstream of or within closure of optic fissure and pronephros development. Predicted to be located in membrane. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pleuroperitoneal region; and tail bud. Orthologous to human FAT1 (FAT atypical cadherin 1).
fat1 Predicted to enable calcium ion binding activity. Predicted to be involved in several processes, including actin filament organization; camera-type eye morphogenesis; and establishment or maintenance of epithelial cell apical/basal polarity. Located in several cellular components, including cell-cell junction; nucleus; and perinuclear region of cytoplasm.

NR:

description
PREDICTED: protocadherin Fat 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3313 True 269 lncRNA 0.59 1 10306970 10307238

Neighbor

gene id symbol gene type direction distance location
frg1 frg1,LOC107656998,LOC107721419,LOC107702291,LOC107554393,LOC107747397 coding downstream 408615 9893021 ~ 9898355 (-)
asah1b asah1b,asah1,LOC107747389,LOC107721418,LOC107656476,LOC107562924 coding downstream 413913 9888744 ~ 9893057 (-)
mtmr7b mtmr7b,LOC107562927,LOC107721424,LOC107656498,LOC107702332,LOC107747392 coding downstream 485869 9806314 ~ 9821101 (-)
fgf20a fgf20a,fgf20,LOC107747399,LOC107721420,LOC107702330,LOC107657011,LOC107562923,LOC106602193 coding downstream 537875 9766547 ~ 9769095 (-)
LOC122347442 sgcz,LOC107656592,LOC107702328 coding downstream 676412 9407160 ~ 9630558 (-)
acsl1a acsl1a,LOC107562746,LOC107702334,LOC107746029,LOC107656816 coding upstream 34590 10341828 ~ 10361688 (-)
si:ch211-197n1.2 si:ch211-197n1.2,LOC107754123,LOC107746042,LOC107702337,LOC107558191,LOC107562734,LOC107562744 coding upstream 65686 10372924 ~ 10398831 (-)
cfap97 LOC107656437 coding upstream 95303 10402541 ~ 10408372 (-)
ufsp2 ufsp2,LOC107754127,LOC107656418,LOC107562733,LOC107746025,LOC107702344 coding upstream 104652 10411890 ~ 10416197 (-)
si:dkey-256e7.8 LOC107577660,LOC107754169,LOC107656796 coding upstream 109522 10416760 ~ 10417566 (-)
G2286 NA non-coding downstream 50083 10256650 ~ 10256887 (-)
G2174 LOC107747394,LOC107562929,LOC107721426 non-coding downstream 514503 9787314 ~ 9792467 (-)
G2138 NA non-coding downstream 613532 9679896 ~ 9693438 (-)
G2038 NA non-coding downstream 1292341 8708219 ~ 9014629 (-)
G2034 NA non-coding downstream 1301610 8700429 ~ 9005360 (-)
G2293 NA non-coding upstream 266 10307504 ~ 10307715 (-)
G2327 NA non-coding upstream 370937 10678175 ~ 10678522 (-)
G2328 NA non-coding upstream 371572 10678810 ~ 10679017 (-)
G2369 NA non-coding upstream 517557 10824795 ~ 10825752 (-)
G2374 NA non-coding upstream 519304 10826542 ~ 10826779 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other downstream 1508615 8779212 ~ 8798355 (-)
G1926 NA other downstream 1699175 8556040 ~ 8607795 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other downstream 1806758 8492144 ~ 8500212 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 3011141 7204004 ~ 7295829 (-)
G1642 NA other downstream 3136948 7125642 ~ 7170022 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 49943 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 427732 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 499331 10806569 ~ 10814075 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 646637 10953875 ~ 10981366 (-)
G2401 NA other upstream 745916 11053154 ~ 11053941 (-)

Expression


Co-expression Network