frg1 (frg1,LOC107656998,LOC107721419,LOC107702291,LOC107554393,LOC107747397)


Basic Information

Item Value
gene id frg1
gene name frg1,LOC107656998,LOC107721419,LOC107702291,LOC107554393,LOC107747397
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9893021 ~ 9898355 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246295.1
ACCGTACACTCACACACTGTTGCAGGAAGTCGCTTTTCAGAACGAGAACGTACGATATCGCGCAAAAACGTTTCGATTCAGCCGCTTTAACCGTGTGCGCGATCATGACGGAGTACGCACACGTAAAGTCCACCAAACTGGTCCTGAAAGGATTAAACGATAAAAGgaagaagaaaaagaacaaagacaAGAAGAGAAAACGAGATGGTGATGAAGACAAGCCGGATGTCGTTGGGGGATGGTGGTCAGCTAAAAGTTTTGGTGAGATCACAGGATCAGTGGCCATTGAGATGCACAAAAGCTCCTACGTTCATGCACTGGACACTGGACTCTTCACCGTAGGAGCTCCACATAAAGAGGATGAAGGCCCAGATCCTCCAGAACAATTTACCGCCATCAGACTCTCGGACTCCAGGATAGCTCTAAAGTCAGGCTATGGGAAGTATTTAGGTATAAGCTCAGAAGGTGTTGTGGTTGGTCGCTCGGATGCCATTGGCTCCAGAGAGCAGTGGGAACCAGTGTTTCAGGATGGTAAACTGGCCCTGCTTGCTGCAAACAGTTGTTTTATCTCATACAGCGAGAGCGGCGACATAGTGGCCAAGAACAAGACCGCTGGAGAGGAGGAGATGATCAAGATCCGTTCATCCACAGAAAGGGAGGTGAAGAGAAAAGACGATATAGCAGATGAAGACAGGGGTGATGTCAAGAACTGCGAGGTCAACTATGTGAAGAAGTTCCAGAGTTTCCAGGATCGGAAGCTGAGGGTGAATGAGGAAGACAGCAGTTCACTAAAAAAAGCCAGAACAGATGGAAAATTCCACGAGGAACTGCTGGATCGgaGAGCCAAGATGAAAGCTGACAGATACTGCAAGTGAATCCAGAagtgtgttttttcccctcattaagttttacagtttttttttttttttttaaaacaataaacctGGTCACTTTtcacaagaaaa
>XM_043246382.1
CACCGTACACTCACACACTGTTGCAGGAAGTCGCTTTTCAGAACGAGAACGTACGATATCGCGCAAAAACGTTTCGATTCAGCCGCTTTAACCGTGTGCGCGATCATGACGGAGTACGCACACGTAAAGTCCACCAAACTGGTCCTGAAAGGATTAAACGATAAAAGgaagaagaaaaagaacaaagacaAGAAGAGAAAACGAGATGGTGATGAAGACAAGCCGGATGTCGTTGGGGGATGGTGGTCAGCTAAAAGTTTTGGTGAGATCACAGGATCAGTGGCCATTGAGATGCACAAAAGCTCCTACGTTCATGCACTGGACACTGGACTCTTCACCGTAGGAGCTCCACATAAAGAGGATGAAGGCCCAGATCCTCCAGAACAATTTACCGCCATCAGACTCTCGGACTCCAGGATAGCTCTAAAGTCAGGCTATGGGAAGTATTTAGGTATAAGCTCAGAAGGTGTTGTGGTTGGTCGCTCGGATGCCATTGGCTCCAGAGAGCAGTGGGAACCAGTGTTTCAGGATGGTAAACTGGCCCTGCTTGCTGCAAACAGTTGTTTTATCTCATACAGCGAGAGCGGCGACATAGTGGCCAAGAACAAGACCGCTGGAGAGGAGGAGATGATCAAGATCCGTTCATCCACAGAAAGGGAGGTGAAGAGAAAAGACGATATAGCAGATGAAGACAGGGGTGATGTCAAGAACTGCGAGGTCAACTATGTGAAGAAGTTCCAGAGTTTCCAGGATCGGAAGCTGAGGGTGAATGAGGAAGACAGCAGTTCACTAAAAAAAGCCAGAACAGATGGAAAATTCCACGAGGAACTGCTGGATCGgaGAGCCAAGATGAAAGCTGACAGATACTGCAAGTGAATCCAGAactCAATGTTTAGGTGAGTAACTCCCCCAGTGTCTCGTGGGTTTGCGCAGATCACGAACCGTCACGAGAGCCACCGGCACTTCCGCCTTCACAGACTCTTCAGAGGA

Function

symbol description
frg1 Predicted to enable actin filament binding activity. Predicted to act upstream of or within muscle organ development. Predicted to be located in Cajal body. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleolus and striated muscle dense body. Orthologous to human FRG1 (FSHD region gene 1).

NR:

description
PREDICTED: protein FRG1-like isoform X2

GO: NA

KEGG:

id description
K13122 FRG1; protein FRG1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246295.1 False 965 mRNA 0.46 9 9893889 9898354
XM_043246382.1 True 990 mRNA 0.49 10 9893021 9898355

Neighbor

gene id symbol gene type direction distance location
mtmr7b mtmr7b,LOC107562927,LOC107721424,LOC107656498,LOC107702332,LOC107747392 coding downstream 71920 9806314 ~ 9821101 (-)
fgf20a fgf20a,fgf20,LOC107747399,LOC107721420,LOC107702330,LOC107657011,LOC107562923,LOC106602193 coding downstream 123926 9766547 ~ 9769095 (-)
LOC122347442 sgcz,LOC107656592,LOC107702328 coding downstream 262463 9407160 ~ 9630558 (-)
dlc1 dlc1,LOC107742489,LOC107656601,LOC107702327,LOC107562932,LOC107750042,LOC107565476 coding downstream 535999 9267535 ~ 9357022 (-)
LOC122353124 slc34a2a,LOC107657019,LOC107742514,LOC107565308,LOC107714203,LOC107562975 coding downstream 950156 8936745 ~ 8942865 (-)
acsl1a acsl1a,LOC107562746,LOC107702334,LOC107746029,LOC107656816 coding upstream 443473 10341828 ~ 10361688 (-)
si:ch211-197n1.2 si:ch211-197n1.2,LOC107754123,LOC107746042,LOC107702337,LOC107558191,LOC107562734,LOC107562744 coding upstream 474569 10372924 ~ 10398831 (-)
cfap97 LOC107656437 coding upstream 504186 10402541 ~ 10408372 (-)
ufsp2 ufsp2,LOC107754127,LOC107656418,LOC107562733,LOC107746025,LOC107702344 coding upstream 513535 10411890 ~ 10416197 (-)
si:dkey-256e7.8 LOC107577660,LOC107754169,LOC107656796 coding upstream 518405 10416760 ~ 10417566 (-)
G2174 LOC107747394,LOC107562929,LOC107721426 non-coding downstream 100554 9787314 ~ 9792467 (-)
G2138 NA non-coding downstream 199583 9679896 ~ 9693438 (-)
G2038 NA non-coding downstream 878392 8708219 ~ 9014629 (-)
G2034 NA non-coding downstream 887661 8700429 ~ 9005360 (-)
G2286 NA non-coding upstream 358295 10256650 ~ 10256887 (-)
G2292 fat1,fat1a,LOC107562748 non-coding upstream 408615 10306970 ~ 10307238 (-)
G2293 NA non-coding upstream 409149 10307504 ~ 10307715 (-)
G2327 NA non-coding upstream 779820 10678175 ~ 10678522 (-)
G2328 NA non-coding upstream 780455 10678810 ~ 10679017 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other downstream 1094666 8779212 ~ 8798355 (-)
G1926 NA other downstream 1285226 8556040 ~ 8607795 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other downstream 1392809 8492144 ~ 8500212 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 2597192 7204004 ~ 7295829 (-)
G1642 NA other downstream 2722999 7125642 ~ 7170022 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 458826 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 836615 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 908214 10806569 ~ 10814075 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 1055520 10953875 ~ 10981366 (-)
G2401 NA other upstream 1154799 11053154 ~ 11053941 (-)

Expression


Co-expression Network