si:dkey-256e7.8 (LOC107577660,LOC107754169,LOC107656796)


Basic Information

Item Value
gene id si:dkey-256e7.8
gene name LOC107577660,LOC107754169,LOC107656796
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10416760 ~ 10417566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236718.1
ATGGACAGCAAGTCTCAAGCAGCCACAAACTTTAAAGGCGCTGTGTGTCTTGAGGATGATAGTTTGAAGAAGAAAGAACAAGAAGCAGGCTGTGCTAAACCCAGCCGTAAGTGCCCGTTTGAGGCATATTTAGAAAAGTGCACACGATTAGAGAAGGAAAACCTAGAGGTTAAGAAGAAGCTCGAAAAGATGGAGACCTACTCAAGAGAATGCAAAACAGAGCTGCAGAAATTTGTGAAGAGGTTTAAAGggtttaaaaacataaacaaggaCCTggatacaaaaaataaacaacttctGATTAAAAACCAGCAAATGAGGCAAAGAATAACGGAGGTCTTGAAGCAGAACAGACCTCAGTCTGAAGATGTGCAGAGTCAGGAGAAGAAACAAGtaagagaaacagagagggtAAGCAACTTAACAGAACCAGTCCGGAAGTCTCATGGAACGAAACAGGATTCAGAAATAACCGAAGAGAGGAAGATCCTAACTCAGCTACAACAGGAAAATCAGGCTCTAAGAGAGAGACTGGACCGCAGCGGTCAAGTCATAAAAGATGCTGAAAGTAGAGCAGAGAGAGTTCAGGAGGAGCTGGACGTACTAGAGAGCTGCCTGCTCACTGTGCAGACTGAGAGGAATCTCCTGCGGCAGGAAGTAAAGAGGCTTCATAAGGAATATATCAGCCTTACTAACATCATCTCAGTGCagctgaaagaaaacaacaaagctGCCGGTCTCAGGGAAACCCCTGAGAGCCCTTTACGGTTCACCACGGTAAAGCCCACCAGCTCAGCATCCAGGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236718.1 True 807 mRNA 0.45 1 10416760 10417566

Neighbor

gene id symbol gene type direction distance location
ufsp2 ufsp2,LOC107754127,LOC107656418,LOC107562733,LOC107746025,LOC107702344 coding downstream 563 10411890 ~ 10416197 (-)
cfap97 LOC107656437 coding downstream 8388 10402541 ~ 10408372 (-)
si:ch211-197n1.2 si:ch211-197n1.2,LOC107754123,LOC107746042,LOC107702337,LOC107558191,LOC107562734,LOC107562744 coding downstream 17929 10372924 ~ 10398831 (-)
acsl1a acsl1a,LOC107562746,LOC107702334,LOC107746029,LOC107656816 coding downstream 55072 10341828 ~ 10361688 (-)
frg1 frg1,LOC107656998,LOC107721419,LOC107702291,LOC107554393,LOC107747397 coding downstream 518405 9893021 ~ 9898355 (-)
pdlim3a pdlim3,pdlim3a,LOC107754177,LOC107656980,LOC107746050,LOC107702342 coding upstream 1066 10418632 ~ 10423541 (-)
sorbs2a sorbs2a,sorbs2,LOC107746024,LOC107562741,LOC107754131,LOC107702341,LOC107656785 coding upstream 8199 10425765 ~ 10471947 (-)
LOC122347847 kdm4c,LOC107655842,LOC107709452,LOC107548355,LOC107750465,LOC107570226 coding upstream 382730 10800296 ~ 10806131 (-)
LOC122347963 msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386 coding upstream 564528 10982094 ~ 10986019 (-)
fam114a1 LOC107754137,LOC107656378,LOC107702351,LOC107746018,LOC107591522 coding upstream 884915 11302481 ~ 11310122 (-)
G2293 NA non-coding downstream 109045 10307504 ~ 10307715 (-)
G2292 fat1,fat1a,LOC107562748 non-coding downstream 109522 10306970 ~ 10307238 (-)
G2286 NA non-coding downstream 159873 10256650 ~ 10256887 (-)
G2174 LOC107747394,LOC107562929,LOC107721426 non-coding downstream 624293 9787314 ~ 9792467 (-)
G2138 NA non-coding downstream 723322 9679896 ~ 9693438 (-)
G2327 NA non-coding upstream 260609 10678175 ~ 10678522 (-)
G2328 NA non-coding upstream 261244 10678810 ~ 10679017 (-)
G2369 NA non-coding upstream 407229 10824795 ~ 10825752 (-)
G2374 NA non-coding upstream 408976 10826542 ~ 10826779 (-)
G2377 NA non-coding upstream 420402 10837968 ~ 10839302 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other downstream 15074 10357181 ~ 10401686 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other downstream 1618405 8779212 ~ 8798355 (-)
G1926 NA other downstream 1808965 8556040 ~ 8607795 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other downstream 1916548 8492144 ~ 8500212 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 3120931 7204004 ~ 7295829 (-)
LOC122347930 dnah6,LOC106610484 other upstream 317404 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 389003 10806569 ~ 10814075 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 536309 10953875 ~ 10981366 (-)
G2401 NA other upstream 635588 11053154 ~ 11053941 (-)
klhl5 klhl5,LOC107565971,LOC107754136,LOC107746020,LOC107656383,LOC107702349,LOC108412945 other upstream 824465 11242031 ~ 11293048 (-)

Expression


Co-expression Network