G2174 (LOC107747394,LOC107562929,LOC107721426)


Basic Information

Item Value
gene id G2174
gene name LOC107747394,LOC107562929,LOC107721426
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9787314 ~ 9792467 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3145
TGTCCAATAGATCGACAGGCAAAGTTGTACATCTGCATGGCGATGGCGAAGTCTTCAAGGTTATTGAGGAACTGGAAGAAAGACCTGAACTCTTCAAAGGTGATGCCCTGATCATGAAAGAAAAGAGCAAAGACACAGGGGCAAAAGAAATCTTTTAATCGGAGACACCCAAGCTAACAGACAGAGCTGCCATAAACTCACATTCCATTCCATTTCTGTGTGCGATGTGACAGAACACACAGGCACAATTCATACCCATGCCAATCTGTACTGAACAGAAAATGCAATAATGGACAAAAAGAAATCAGCGTTTTGATATTTGCAAAAGAAGTCATGCTTGTTTGCTGATGCGTGTTCTGCTCACAATGATGCATGCGACGATGAAAGGCATGAGTCATTTTACAGCACAATGTCATAAAATTGTCAGCCTGTCTAAATGCGGAGAAGcgaaaacaaacagcatgacATCATAGACTGGAATCAAAGAGATAACCTGACCGACAACAGAACACCAAGAATGTCTTAAAAACAGCTCCAACGTTGgggtctttttaaaaataagcctCTTACACTCACccaggctgaatttatttagtcaaaaatagcattattttaaaataccaatacccatttttatatttatttgaatatattttaaaaataaattcacatgatgggaaagctgaatttcctgcagtcattactccggtcttcagtgtcacatgatcctttagaaatcattgtaatatatgATTTGATGCTGTGGAAACATTTCCTATTATCATTGATGTTGCAATTTAattgttgtgctgtttaatatttgtttaatatttgaaattatttcataattttggggtaatctttaattaaaaaaaaaaacttgactcTAACATTTTGAAAAGTAGTTTACAGTAACATAGacccaaaaataatatttgtgtcttcatttactcaccctcatgttgttcaaacCCTGCATTTCTTTCGTCTGTGAAACACATTTTGAAGAACTTTACATCTTTGTAACATCTGACAAAACGTGGACACCCAAGACATTTTCCAACACGCATtatatgttccacagaaaaaaaaataaaatgagggtgagtaagtgatgacaggaattaatttttttacaactgaatgcaaaaaacacattgtCCTGCCTGTCAAAATGAATCCACGATTAAATCTTTTCCCTGAGGGTGTCAGTGTGAATTAACACAGATCTGCTTTTTGGTTGTAGAAAAAGATAAAGGGTAATGAGGTAGAAAATACCTTAAACAAACACAGGAAAGGCTTGTCACAGCTATGGTAATCCACATAAACCTCTCTGGTGAGTATTTAACATTGTTCTAGTTACACATTATTCTTAACTGTTGAGTCGGTTTGATGTTTAAAAGCTGGATTTTGCTGGGTTGAGTTCAGGACTTGGCACTCTGGTGGAAAACCATAAAATGCCATAAAGGTGAGTTTAAAGTCTATTCTGTGGGAATTTGAGAGGAGGGTGAAGTCATTCTAGCCAAATGTACAAACTGCTCTGAGGGGCCCCAAAACCTGATACCCTCAACACAAACAGATCCCTCAGGTGGGACTGGGAAAGAGCTAAAAGAGAGCAGTCAGGCGTGGAGGAACCTACATCAGGTGACCCCCCAGAGATGGACAGCATGACAGTTCGTATTCAAACACAAACTTTCCCCCGAGCACCCCATACCAACACAAATACAGTGGGtgaaaaagtatttggacacttcacattatgtattttaaagatatGTAGGTAGGTATACAGACGGCCAGGTAGGTATAGAAGGTGGATAGACATGTTGTTGTGTAGACAGAAAGCAGGTAGAGCAGGTAGAGAGATAGGTAGGGCGGATAAGTAGATGGGTAGATAGGTAGGGTAGGCAGGTGGAGAGTCATGTATATCTTGACAGGTAAGAAGGGTAGATAAAAGGATGGTAGATAAGTAAGTACATAGACAAGTTGTGAATTATGGGGGGACTTTATCGGCACTTGATCGCTCCTGATgggcattaaaacaaaaactatatgcATTAAACATGCCTTgactatgataaaaaaaaaaggcagctcCTGATGGTTGAATCGAGTGAATCAATGTTTAAGTAAATCATTCATACAGTCAGTGGCTGTTTCTCAAACAGAAGGCTACATCTTCCGGAGGATGCATTTGTAGGTTGCATAGATCATCAGGcctggtttatttcagttaactgaaaaatatattcgttaatatactaaaataagacCTTTTTATGACCTATGCAGCATACAAATGCGACCACCGGAGGATGCGCTGCACAGATGGTCACTGCATAATTTGCATAGGCAAGTAGACAGGTAGACAGGAAGATAAATATACAGGTAAGTATGTAGACAGGTTTCGTGGTAGGTATGTATACGGTATGTAGAAAAGAGATAGTTCAACAAATAGGTAGATGGACAAGTAGATAGACAGGTAGTAAGGATAGGCAGTTACAGGACAAATACATCAAcaattagatagatagatatatagatattttggtATGGATGAAGTAACCAAATACTTTTTCAGGCCACTTTAtgtctaaatataatttaaactcAAGAAATATGTTGAAAGCTCTCACACAACAAGATCATCTCAGCTTGTTGAAAGTAAAGGGAATTTACTTTCTTGTACATGTGCCACAAAatcaaaaagagagaaaccaaCTGAAACAAAACGAAAGGCAAATCCAAACAAAACACGATCTGATCAAGAGCTGCGGGACGACGAATCATTCTGGCAGGGACAAACCTCTGCTTTCTTCCAGTGTGTGATAAACAGGGATAACAGAGAGAATACAGGAAGTTTGTGTACACTGTAATAGAGCTGGAACTTACCCTGCATGTTGTGCGCCCCTAAgaccttctttttttattacaccaATATTGCAAATTCATTATATACTATATGCTGTTATGTATCAAATGCATCAATACTTCAGTAATCGGTATAGATATACTGGATTCTGATAACAGAAATCTCTAAAAAAAAGATATCAGGGTTCTATGAAGGGACACTATGAAGATTAAACTGTAGTTTACATGCAAGTATCCCACACTGTGGGGCACTTCAGCATTCAAAGGTTAATGAGCACTTGATGTGTggaaatgtgtgtattttgggGCTGAATAAGAACATTTTACACATGCATTATTTCATACACGCACAACAAATATATGTGCAAggtaatgaaaattaattagtaggggtattagtattagtattttatttgtgggGCACAAAGTGTTAAACCATGTAATGCTATTGGGAGGAGAATTAACAAGTCGTTTGAAAGTGTGAGCATGGGGGAGGTGGTCATCTCAGTTGTCCCACACCTTCCTTTGAGATGAACGTAGAGGCCAAGTGATGTTACTCATTACCTTCTCATCAGGTATGCACTGCCGCACATTCTCCAGATAGCTGCGGATATCTTCTACGTTAGTGTAGCGCAGCAAGATTCGTGCAAAGTCCTCCTCACTGATGGTGGTCATGCCTTTGGAATAAGTCAGGAACTCGATCTCCAACATCTCAGTTTGCAGATTATCCATAACCTGTAGAAGTCGTCGAATGTTAGTTCCGCCTTCCCCTTCTTGCCAAAGAAGTGCACAAGCAGAGTGGTGTCAATCATCATGTTCTCATCGGCACGCTGCGATTGGTGAGCAGGTAAGAGAGCAAAACGAGAAAGAAGAAACTATGACAAAAATCCTCCTGTCTCTGGAATGAGAAATCAGTCCATCATAGGCTTGCTGAGCCATTCAGAGTACCAGCCATCCAGCCTTGAAAGTGTGTATCTATATATCATTTCTCCCCTGAGCCTACAGGGGACATGTTCTGAGAAGACGTGCAAATCTTTATACCATACAGGTAGAGGGTGAGAACGGCATAAAGATTgtatattaaactaaaacagacacacaaagagCAATGGTACAcagaaatgcacacaaacatgcCAGTTGTGTACATAGACACTCCCTGTATACATCTGGTACAGCCATTTACAAAAATTGGACATTGATACCAGATGTAAACAGTACAAGACACCAAGACAGGACAACAAAAGCAAAGAGCATCCATATCGCATGCGTTTCTGCAGCAAACTTTCACACAGCGTATCTTTCAGATTTGTGAAAGAAATGCACACGTGAGCAAATTCCACCTTTCCTTCTCTAGAGACAATCTCCAGTTTGTTTAAAAACCTTAACTCTAAAGCTAAAGATCAATTTGAGTGATCTTGTAAGTatcatttatacttttttttttatcaagtggAGCTCAGGAAAAGGCGTTGATGTTGTTTATTCACCAGGAAAAAATAATTTGCTAGTGGCACGACATCCAAAAACCTAAGAAGGTGGCCGATCCAAGCAAATCCAggttgtttctttctttccctttctATCCATGCTTCACCCTCATCTGCAAGAAGAGCCTATCATGCTTAGACCAGGTAAAACCAGGCATAAACTCTAAATAGCTCTTCTCATGGACTCTGTGCAATAAAGCGGGCCAGAATGCAAGTCCATGCTGTACCTCTAGCTTAAAATCCTATCCATGGAGATACAATCAGTGGGTAgttataaagagaaaaagaatggTTCCTTTTCACTAGCCAGATAGAGTTTGGTGttgtataaacataataaacccCCCCCCACAAAATTGTAAATCGGTGACTGTAAAACAGGGTGGAAATAACTTCTGATCCCGGGTATAGAAGTCTGTTTCCAGAATAGAATAGATTAGGATTAAATAGAATAgagtagaatagaatagaacagaatagaatagcggttaaaatgaaaaagtaccAATTGTGATATGTAAAGCCACAATTGTAATAAAGcaaatacctttttat

Function

NR:

description
PREDICTED: calcium uptake protein 3, mitochondrial-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3145 True 4916 lncRNA 0.42 2 9787314 9792467

Neighbor

gene id symbol gene type direction distance location
fgf20a fgf20a,fgf20,LOC107747399,LOC107721420,LOC107702330,LOC107657011,LOC107562923,LOC106602193 coding downstream 18219 9766547 ~ 9769095 (-)
LOC122347442 sgcz,LOC107656592,LOC107702328 coding downstream 156756 9407160 ~ 9630558 (-)
dlc1 dlc1,LOC107742489,LOC107656601,LOC107702327,LOC107562932,LOC107750042,LOC107565476 coding downstream 430292 9267535 ~ 9357022 (-)
LOC122353124 slc34a2a,LOC107657019,LOC107742514,LOC107565308,LOC107714203,LOC107562975 coding downstream 844449 8936745 ~ 8942865 (-)
LOC122353120 rbpja,LOC107563830,LOC107742494,LOC107702317,LOC107562987 coding downstream 854750 8927021 ~ 8932564 (-)
mtmr7b mtmr7b,LOC107562927,LOC107721424,LOC107656498,LOC107702332,LOC107747392 coding upstream 13847 9806314 ~ 9821101 (-)
asah1b asah1b,asah1,LOC107747389,LOC107721418,LOC107656476,LOC107562924 coding upstream 96277 9888744 ~ 9893057 (-)
frg1 frg1,LOC107656998,LOC107721419,LOC107702291,LOC107554393,LOC107747397 coding upstream 100554 9893021 ~ 9898355 (-)
acsl1a acsl1a,LOC107562746,LOC107702334,LOC107746029,LOC107656816 coding upstream 549361 10341828 ~ 10361688 (-)
si:ch211-197n1.2 si:ch211-197n1.2,LOC107754123,LOC107746042,LOC107702337,LOC107558191,LOC107562734,LOC107562744 coding upstream 580457 10372924 ~ 10398831 (-)
G2138 NA non-coding downstream 93876 9679896 ~ 9693438 (-)
G2038 NA non-coding downstream 772685 8708219 ~ 9014629 (-)
G2034 NA non-coding downstream 781954 8700429 ~ 9005360 (-)
LOC122351897 NA non-coding downstream 892752 8893620 ~ 8894562 (-)
G2033 NA non-coding downstream 1089913 8695872 ~ 8697401 (-)
G2286 NA non-coding upstream 464183 10256650 ~ 10256887 (-)
G2292 fat1,fat1a,LOC107562748 non-coding upstream 514503 10306970 ~ 10307238 (-)
G2293 NA non-coding upstream 515037 10307504 ~ 10307715 (-)
G2327 NA non-coding upstream 885708 10678175 ~ 10678522 (-)
G2328 NA non-coding upstream 886343 10678810 ~ 10679017 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other downstream 988959 8779212 ~ 8798355 (-)
G1926 NA other downstream 1179519 8556040 ~ 8607795 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other downstream 1287102 8492144 ~ 8500212 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 2491485 7204004 ~ 7295829 (-)
G1642 NA other downstream 2617292 7125642 ~ 7170022 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 564714 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 942503 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 1014102 10806569 ~ 10814075 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 1161408 10953875 ~ 10981366 (-)
G2401 NA other upstream 1260687 11053154 ~ 11053941 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001115 NA non-coding NC_007112.7 CM002885.2 16436569 ~ 16440927 (-)
grasscarp (Ctenopharyngodon idella) G411209 NA non-coding CI01000300 null 5199171 ~ 5207602 (-)